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Ability to add fallback / default values for fields where annotation source is missing #139

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ssadedin opened this issue Mar 7, 2021 · 0 comments

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@ssadedin
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ssadedin commented Mar 7, 2021

It would be really useful if we could have vcfanno put a value into a field when it is observed to be missing from an annotation source.

I tried to achieve this by using custom lua in the annotation and post annotation sections, but I couldn't work out in both cases how to formulate something that would work. It could be as simple as "op" that lets you set a fixed default value when the annotation source is missing, but the ideal thing would be if you could set it in post annotation.

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