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Better support segmentation of features in raw data space #170

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adamltyson opened this issue Mar 1, 2024 · 1 comment
Open

Better support segmentation of features in raw data space #170

adamltyson opened this issue Mar 1, 2024 · 1 comment
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enhancement New feature or request

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@adamltyson
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adamltyson commented Mar 1, 2024

There are some problems that would fit this tool, but cannot be performed on downsampled data, such as segmenting out total labelled cell volumes (see image.sc post).

It would be nice to add a simpler way for users to:

  • Run a segmentation algorithm of their choice on the raw data
  • Load this into to brainglobe-segmentation
  • Run analysis of volumes per brain region as with anything else
@adamltyson adamltyson added the enhancement New feature or request label Mar 1, 2024
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This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/use-registered-atlases-from-brainreg-for-segmentation-in-imaris/86206/55

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