Import error ImportError: No module named lib.sparseResp.LibSparseResp

[cyriltw]

Installation is completed but when I try to import bnpy I get this error. I'm on Python 2.7, any idea what is the issue for it and how to fix it?

>>> import bnpy Traceback (most recent call last): File "<stdin>", line 1, in <module> File "bnpy/__init__.py", line 20, in <module> import allocmodel File "bnpy/allocmodel/__init__.py", line 7, in <module> from topics.FiniteTopicModel import FiniteTopicModel File "bnpy/allocmodel/topics/FiniteTopicModel.py", line 3, in <module> import LocalStepManyDocs File "bnpy/allocmodel/topics/LocalStepManyDocs.py", line 15, in <module> from bnpy.util.lib.sparseResp.LibSparseResp \ ImportError: No module named lib.sparseResp.LibSparseResp

[ameya98]

I'm having a lot of issues on 2.7 as well.

• Had to downgrade munkres to v1.0.12. The current version 1.1.2 causes a SyntaxError on execution.
• After this, when running the HMM example:

python -m bnpy.Run temp/test.csv HDPHMM DiagGauss memoVB --K 8

I get AttributeError: 'XData' object has no attribute 'nDoc'.

[michaelchughes]

Thanks for the bug report! I'm trying to get both 2.7 and 3+ versions into shape soon. Hopefully in next week or so.

…

On Mon, Jul 1, 2019 at 5:54 PM Ameya Daigavane ***@***.***> wrote: I'm having a lot of issues on 2.7 as well. - Had to downgrade munkres to v1.0.12. The current version 1.1.2 causes a SyntaxError on execution. - After this, when running the HMM example: python -m bnpy.Run temp/test.csv HDPHMM DiagGauss memoVB --K 8 I get AttributeError: 'XData' object has no attribute 'nDoc'. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#22?email_source=notifications&email_token=AASBQBA6PNCSUID3VKOYVR3P5J4JZA5CNFSM4HIC7HDKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODY7OXOA#issuecomment-507440056>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AASBQBAV62HSGADBMLUDDBTP5J4JZANCNFSM4HIC7HDA> .

[cyriltw]

Another issue is,
PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
This just causes the entire thing to crash on my end.