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pom.xml
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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.rcsb</groupId>
<artifactId>viewers</artifactId>
<version>4.7.8-SNAPSHOT</version>
<properties>
<jogl.version>2.3.1</jogl.version>
<jdk.version>1.6</jdk.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.build.targetEncoding>UTF-8</project.build.targetEncoding>
<maxmem>500M</maxmem>
</properties>
<packaging>pom</packaging>
<name>rcsbviewers</name>
<description>The RCSB PDB 3D viewers as a maven project.</description>
<repositories>
<repository>
<id>maven2-repository.dev.java.net</id>
<name>Java.net Repository for Maven</name>
<url>http://download.java.net/maven/2/</url>
<layout>default</layout>
</repository>
<repository>
<id>com.springsource.repository.bundles.external</id>
<name>SpringSource Enterprise Bundle Repository - External Bundle Releases</name>
<url>http://repository.springsource.com/maven/bundles/external</url>
</repository>
</repositories>
<!--############################################################################ -->
<!-- Where Maven deploys project jars/wars -->
<!--############################################################################ -->
<distributionManagement>
<downloadUrl>http://nexus.rcsb.org/nexus/content/repositories/releases/</downloadUrl>
<repository>
<id>releases</id>
<name>RCSB PDB Maven Repository</name>
<url>http://nexus.rcsb.org/nexus/content/repositories/releases</url>
</repository>
<snapshotRepository>
<id>snapshots</id>
<url>http://nexus.rcsb.org/nexus/content/repositories/snapshots</url>
<uniqueVersion>false</uniqueVersion>
</snapshotRepository>
</distributionManagement>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.7</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
<version>2.4.0</version>
</dependency>
<dependency>
<groupId>java3d</groupId>
<artifactId>vecmath</artifactId>
<!-- <version>1.5.2</version> -->
<version>1.3.1</version>
</dependency>
<!--
<dependency>
<groupId>javax.media</groupId>
<artifactId>jai_core</artifactId>
<version>1.1.3</version>
</dependency>
-->
<dependency>
<groupId>com.github.jai-imageio</groupId>
<artifactId>jai-imageio-core</artifactId>
<version>1.3.0</version>
</dependency>
<dependency>
<groupId>javax.media.jai</groupId>
<artifactId>com.springsource.javax.media.jai.codec</artifactId>
<version>1.1.3</version>
</dependency>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>jcolorbrewer</artifactId>
<version>5.2</version>
</dependency>
<!-- JOGL & Glugen -->
<dependency>
<groupId>org.jogamp.gluegen</groupId>
<artifactId>gluegen-rt-main</artifactId>
<version>${jogl.version}</version>
</dependency>
<dependency>
<groupId>org.jogamp.jogl</groupId>
<artifactId>jogl-all-main</artifactId>
<version>${jogl.version}</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<version>2.5</version>
</plugin>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.0</version>
<configuration>
<source>${jdk.version}</source>
<target>${jdk.version}</target>
<maxmem>${maxmem}</maxmem>
</configuration>
</plugin>
<plugin>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.12</version>
<configuration>
<forkMode>once</forkMode>
<argLine>-Xms512m -Xmx512m</argLine>
</configuration>
</plugin>
</plugins>
</build>
<modules>
<module>molecular-biology-toolkit</module>
<module>applications</module>
<module>framework</module>
</modules>
<profiles>
<!-- Note: before you can use this build profile you need to set up an
environment that contains correctly signed keys. Configure the keystore properties
and the profile in ~/.m2/settings.xml -->
<profile>
<id>codesigning</id>
<activation>
<activeByDefault>false</activeByDefault>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jarsigner-plugin</artifactId>
<version>1.4</version>
<executions>
<execution>
<id>sign</id>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
<configuration>
<removeExistingSignatures>true</removeExistingSignatures>
<verbose>true</verbose>
<certs>true</certs>
<storetype>${keystore.type}</storetype>
<keystore>${keystore.path}</keystore>
<alias>${keystore.alias}</alias>
<storepass>${keystore.store.password}</storepass>
<keypass>${keystore.key.password}</keypass>
<verbose>true</verbose>
<goal>sign</goal>
<arguments>
<argument>-tsa</argument>
<argument>https://timestamp.geotrust.com/tsa</argument>
</arguments>
</configuration>
</plugin>
</plugins>
</build>
</profile>
</profiles>
</project>