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pom.xml
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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.biojava</groupId>
<artifactId>sequenceui</artifactId>
<name>protein-sequence-gui</name>
<version>2016.06.30.01-SNAPSHOT</version>
<description>A GUI for showing protein sequences</description>
<url>http://www.rcsb.org</url>
<scm>
<connection>scm:git:git://github.com/rcsb/rcsb-sequenceviewer.git</connection>
<developerConnection>scm:git:git@github.com:rcsb/rcsb-sequenceviewer.git</developerConnection>
<url>https://github.com/rcsb/rcsb-sequenceviewer</url>
<tag>HEAD</tag>
</scm>
<!-- where Maven deploy will deploy project jars/wars -->
<distributionManagement>
<downloadUrl>http://nexus.rcsb.org/nexus/content/repositories/releases/</downloadUrl>
<repository>
<id>releases</id>
<name>RCSB PDB Maven Repository</name>
<url>http://nexus.rcsb.org/nexus/content/repositories/releases</url>
</repository>
<snapshotRepository>
<id>snapshots</id>
<url>http://nexus.rcsb.org/nexus/content/repositories/snapshots</url>
<uniqueVersion>false</uniqueVersion>
</snapshotRepository>
</distributionManagement>
<properties>
<jdk.version>1.7</jdk.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.build.targetEncoding>UTF-8</project.build.targetEncoding>
<maxmem>512M</maxmem>
<biojava.version>4.2.2</biojava.version>
</properties>
<dependencies>
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20090211</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2.2</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.4</version>
</dependency>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-core</artifactId>
<version>${biojava.version}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-modfinder</artifactId>
<version>${biojava.version}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-structure</artifactId>
<version>${biojava.version}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-structure-gui</artifactId>
<version>${biojava.version}</version>
<scope>compile</scope>
</dependency>
<!-- Junit -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.0.2</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>2.1.2</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.1</version>
<configuration>
<remoteTagging>true</remoteTagging>
<preparationGoals>clean install</preparationGoals>
<autoVersionSubmodules>true</autoVersionSubmodules>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-clean-plugin</artifactId>
<version>2.4.1</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.8</version>
</plugin>
</plugins>
<extensions>
<extension>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-ssh</artifactId>
<version>2.2</version>
</extension>
</extensions>
</build>
</project>