{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":9199359,"defaultBranch":"master","name":"biojava","ownerLogin":"biojava","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2013-04-03T16:27:17.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/237402?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1709749023.0","currentOid":""},"activityList":{"items":[{"before":"4fcb3b1b61591d158c5984f51c121db2674e619c","after":"b33d74cc9918f0c17ea73933879d25973dd365d6","ref":"refs/heads/master","pushedAt":"2024-04-26T03:42:12.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1093 from cometbroom/issue-1092-windows-tests\n\nFix FastaStreamerTest tests failing on windows due to URL handling","shortMessageHtmlLink":"Merge pull request #1093 from cometbroom/issue-1092-windows-tests"}},{"before":"64cb3033f7686330d46591084f4750b2c537be1d","after":"4fcb3b1b61591d158c5984f51c121db2674e619c","ref":"refs/heads/master","pushedAt":"2024-04-24T21:53:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Adding windows, #1092","shortMessageHtmlLink":"Adding windows, #1092"}},{"before":"73e99caea5691161d8c30bd7c3f9d9bfafdff00c","after":"64cb3033f7686330d46591084f4750b2c537be1d","ref":"refs/heads/master","pushedAt":"2024-04-23T19:26:20.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1087 from heuermh/guava-33.1.0-jre\n\nUpdate guava dependency version to 33.1.0-jre","shortMessageHtmlLink":"Merge pull request #1087 from heuermh/guava-33.1.0-jre"}},{"before":"e7c31d74cda592fd9e193fd8cc06ec156244bd8e","after":"73e99caea5691161d8c30bd7c3f9d9bfafdff00c","ref":"refs/heads/master","pushedAt":"2024-04-23T19:25:35.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1091 from jlerbsc/S2293\n\nFix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')","shortMessageHtmlLink":"Merge pull request #1091 from jlerbsc/S2293"}},{"before":"266d835be82367b9e588d4215ca6167a08052c15","after":"e7c31d74cda592fd9e193fd8cc06ec156244bd8e","ref":"refs/heads/master","pushedAt":"2024-04-23T18:57:17.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1089 from cinsttool/master\n\nFix container inefficiency in GenericFastaHeaderParser.java","shortMessageHtmlLink":"Merge pull request #1089 from cinsttool/master"}},{"before":"1042a330c333d430ccca845abd85057fb4eb6b97","after":"266d835be82367b9e588d4215ca6167a08052c15","ref":"refs/heads/master","pushedAt":"2024-04-08T21:45:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Fixing test","shortMessageHtmlLink":"Fixing test"}},{"before":"181e5d5d8a0f4e6350250681b5dfd84a459d5596","after":"1042a330c333d430ccca845abd85057fb4eb6b97","ref":"refs/heads/master","pushedAt":"2024-03-06T19:06:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Updating for new release","shortMessageHtmlLink":"Updating for new release"}},{"before":"3eaf1651f945a4fff1fc204c9b54d2c9c8ddbb56","after":"181e5d5d8a0f4e6350250681b5dfd84a459d5596","ref":"refs/heads/master","pushedAt":"2024-03-06T18:17:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"[maven-release-plugin] prepare for next development iteration","shortMessageHtmlLink":"[maven-release-plugin] prepare for next development iteration"}},{"before":"7ed50c1abcafed36b11bb67a0c034c09e8085134","after":"3eaf1651f945a4fff1fc204c9b54d2c9c8ddbb56","ref":"refs/heads/master","pushedAt":"2024-03-06T18:17:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"[maven-release-plugin] prepare release biojava-7.1.1","shortMessageHtmlLink":"[maven-release-plugin] prepare release biojava-7.1.1"}},{"before":"81e054420545cb7f8b8d59f7dacdf93ccffecc9f","after":"7ed50c1abcafed36b11bb67a0c034c09e8085134","ref":"refs/heads/master","pushedAt":"2024-03-06T17:54:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Updating changelog for next release","shortMessageHtmlLink":"Updating changelog for next release"}},{"before":"f94e5771c170e53d745c8323cf828d8ef65df599","after":"81e054420545cb7f8b8d59f7dacdf93ccffecc9f","ref":"refs/heads/master","pushedAt":"2024-03-06T17:46:38.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1086 from jlerbsc/master\n\nFix sonar issue 2629 Logging arguments should not require evaluation","shortMessageHtmlLink":"Merge pull request #1086 from jlerbsc/master"}},{"before":"874ce88564e6d203f36d654e0bdba56fb283fd66","after":"f94e5771c170e53d745c8323cf828d8ef65df599","ref":"refs/heads/master","pushedAt":"2024-03-06T17:12:59.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1085 from josemduarte/miscfixes\n\nReplacing home-made copy by Files.copy","shortMessageHtmlLink":"Merge pull request #1085 from josemduarte/miscfixes"}},{"before":"8b0c4303e1cd1dba44f75da26a50de33d4605181","after":"874ce88564e6d203f36d654e0bdba56fb283fd66","ref":"refs/heads/master","pushedAt":"2024-03-04T21:17:39.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/master'","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/master'"}},{"before":"30a6002e11fb3b410fee96f74909303ce485740d","after":"8b0c4303e1cd1dba44f75da26a50de33d4605181","ref":"refs/heads/master","pushedAt":"2024-03-04T21:03:01.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1083 from josemduarte/parseEsmCifFix\n\nMore lenient mmCIF parsing","shortMessageHtmlLink":"Merge pull request #1083 from josemduarte/parseEsmCifFix"}},{"before":"a76e0bc387cfa034384a85e56710dc0d30b1c2ba","after":"30a6002e11fb3b410fee96f74909303ce485740d","ref":"refs/heads/master","pushedAt":"2024-03-04T20:06:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Forgot to use zulu","shortMessageHtmlLink":"Forgot to use zulu"}},{"before":"a9542ca195e539380dc0aff82182b7f1b4665e61","after":"a76e0bc387cfa034384a85e56710dc0d30b1c2ba","ref":"refs/heads/master","pushedAt":"2024-03-04T20:02:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Trying to fix openjdk 11 error in workflows","shortMessageHtmlLink":"Trying to fix openjdk 11 error in workflows"}},{"before":"1b5fa3c503d5d071f66f0a59ebbe396ebb2f6181","after":"a9542ca195e539380dc0aff82182b7f1b4665e61","ref":"refs/heads/master","pushedAt":"2024-03-04T19:20:46.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1082 from jlerbsc/master\n\nfix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality","shortMessageHtmlLink":"Merge pull request #1082 from jlerbsc/master"}},{"before":"ab17e62725ba842e404db0dd2a451cacbcdcb980","after":"1b5fa3c503d5d071f66f0a59ebbe396ebb2f6181","ref":"refs/heads/master","pushedAt":"2024-03-04T18:56:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Upgrading actions workflow versions and java versions used","shortMessageHtmlLink":"Upgrading actions workflow versions and java versions used"}},{"before":"bf0cfe68574af8debc897b63c35a1b3d9ae375d3","after":"ab17e62725ba842e404db0dd2a451cacbcdcb980","ref":"refs/heads/master","pushedAt":"2024-02-23T19:48:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Updating after release","shortMessageHtmlLink":"Updating after release"}},{"before":"1b6159d36a0e239dee45e0ee7ad52c6c490d3760","after":"bf0cfe68574af8debc897b63c35a1b3d9ae375d3","ref":"refs/heads/master","pushedAt":"2024-02-23T19:32:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"[maven-release-plugin] prepare for next development iteration","shortMessageHtmlLink":"[maven-release-plugin] prepare for next development iteration"}},{"before":"41a6e4b7617598f0a9c32555de1fbb0c34bee66d","after":"1b6159d36a0e239dee45e0ee7ad52c6c490d3760","ref":"refs/heads/master","pushedAt":"2024-02-23T19:32:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"[maven-release-plugin] prepare release biojava-7.1.0","shortMessageHtmlLink":"[maven-release-plugin] prepare release biojava-7.1.0"}},{"before":"c672d013a45c5ea7f4e47902528c3434c037fb3e","after":"41a6e4b7617598f0a9c32555de1fbb0c34bee66d","ref":"refs/heads/master","pushedAt":"2024-02-23T19:22:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Updating changelog in preparation for release","shortMessageHtmlLink":"Updating changelog in preparation for release"}},{"before":"c00ed2fc98b755634eb1b7c68adcbdc464e7d301","after":"c672d013a45c5ea7f4e47902528c3434c037fb3e","ref":"refs/heads/master","pushedAt":"2024-02-23T19:12:09.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1080 from hilbertglm/20240113-streaming\n\nAdded Java Streaming I/O for FASTA Files","shortMessageHtmlLink":"Merge pull request #1080 from hilbertglm/20240113-streaming"}},{"before":"79f2062d17e69ca8bd2a6b3102448bcbda31e536","after":"c00ed2fc98b755634eb1b7c68adcbdc464e7d301","ref":"refs/heads/master","pushedAt":"2024-01-25T05:18:25.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1078 from heuermh/guava-33.0.0-jre\n\nUpdate guava dependency version to 33.0.0-jre","shortMessageHtmlLink":"Merge pull request #1078 from heuermh/guava-33.0.0-jre"}},{"before":"a3d943783b1d6e1958331b64cd33e3c6009d028a","after":"79f2062d17e69ca8bd2a6b3102448bcbda31e536","ref":"refs/heads/master","pushedAt":"2024-01-25T05:17:15.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1077 from hilbertglm/20240108-scop\n\nChanged the SCOP Installation URLs","shortMessageHtmlLink":"Merge pull request #1077 from hilbertglm/20240108-scop"}},{"before":"05c229ce78a92f9158f9c409443ee8058a59c75e","after":"a3d943783b1d6e1958331b64cd33e3c6009d028a","ref":"refs/heads/master","pushedAt":"2024-01-05T17:58:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Updating test","shortMessageHtmlLink":"Updating test"}},{"before":"393a98a473dc8e759a87e475f2fa6fe095a8b3fe","after":"05c229ce78a92f9158f9c409443ee8058a59c75e","ref":"refs/heads/master","pushedAt":"2024-01-05T17:53:43.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1076 from hilbertglm/20231229-jaxb\n\nUpdated to Jakarta JAXB and Java 17 (ref: #1075)","shortMessageHtmlLink":"Merge pull request #1076 from hilbertglm/20231229-jaxb"}},{"before":"d276c1a95b9b9722e50bef75093316fe2d7ffc5d","after":"393a98a473dc8e759a87e475f2fa6fe095a8b3fe","ref":"refs/heads/master","pushedAt":"2023-12-04T20:02:36.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Merge pull request #1073 from sjaenick/master\n\nDependency updates","shortMessageHtmlLink":"Merge pull request #1073 from sjaenick/master"}},{"before":"928e0dde6cbb9fa7423d19b9cd438f7c5575f074","after":"d276c1a95b9b9722e50bef75093316fe2d7ffc5d","ref":"refs/heads/master","pushedAt":"2023-12-04T17:43:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Another gh workflow issue","shortMessageHtmlLink":"Another gh workflow issue"}},{"before":"6d23660fc767b80bb57ccd28b6a39348c6a82e86","after":"928e0dde6cbb9fa7423d19b9cd438f7c5575f074","ref":"refs/heads/master","pushedAt":"2023-12-04T17:41:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"josemduarte","name":"Jose Manuel Duarte","path":"/josemduarte","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6000474?s=80&v=4"},"commit":{"message":"Fixing gh workflow issue after upgrading setup-java","shortMessageHtmlLink":"Fixing gh workflow issue after upgrading setup-java"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEOsXy7gA","startCursor":null,"endCursor":null}},"title":"Activity ยท biojava/biojava"}