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ProtParam tutorial #30

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Baytars opened this issue Jan 24, 2021 · 2 comments
Open

ProtParam tutorial #30

Baytars opened this issue Jan 24, 2021 · 2 comments

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@Baytars
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Baytars commented Jan 24, 2021

I have discovered some code that may be using ProtParam service (package org.biojava.nbio.aaproperties?). Any tutorial for using the package to achieve similar functionality to ProtParam, say, get amino acids percents?

@josemduarte
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josemduarte commented Jan 25, 2021

Package biojava-aa-prop contains code to calculate aminoacid/peptide properties. Unfortunately it is not currently covered in the tutorial, but there is a small demo in the demo package within the module, plus a few tests in src/test (e.g. PeptidePropertiesImplTest) that should make it not too difficult to get started.

@Baytars
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Baytars commented Jan 26, 2021

Package biojava-aa-prop contains code to calculate aminoacid/peptide properties. Unfortunately it is not currently covered in the tutorial, but there is a small demo in the demopackage within the module, plus a few tests insrc/test(e.g.PeptidePropertiesImplTest`) that should make it not too difficult to get started.

Thanks for your guidance! I'll check it out!

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