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Upgrade gprofiler to gprofiler2 #158

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biodavidjm opened this issue Apr 23, 2020 · 0 comments
Open

Upgrade gprofiler to gprofiler2 #158

biodavidjm opened this issue Apr 23, 2020 · 0 comments
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@biodavidjm
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A new version of gprofiler is out: gprofiler2.
the main function is now

gostres <- gost(query = c("X:1000:1000000", "rs17396340", "GO:0005005", "ENSG00000156103", "NLRP1"), 
                organism = "hsapiens", ordered_query = FALSE, 
                multi_query = FALSE, significant = TRUE, exclude_iea = FALSE, 
                measure_underrepresentation = FALSE, evcodes = FALSE, 
                user_threshold = 0.05, correction_method = "g_SCS", 
                domain_scope = "annotated", custom_bg = NULL, 
                numeric_ns = "", sources = NULL, as_short_link = FALSE)
@biodavidjm biodavidjm added this to To do in artMS Jul 19, 2021
@biodavidjm biodavidjm moved this from To do to In progress in artMS Aug 11, 2021
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