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Normalizer constructor doesn't pass the validate param to the VariantMapper constructor #704

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mihaitodor opened this issue Oct 7, 2023 · 4 comments
Open

Normalizer constructor doesn't pass the validate param to the VariantMapper constructor #704

mihaitodor opened this issue Oct 7, 2023 · 4 comments
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@mihaitodor
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When initialising an AssemblyMapper, a new Normalizer is initialised here. However, the Normaliser initialisation instantiates a new VariantMapper here, but it doesn't set the prevalidation_level field for this VariantMapper, which means that it will fall back to reading the global config here.

I'm looking to avoid making calls to seqfetcher for transcripts and I bumped into this issue.
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This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 7 days.

@github-actions github-actions bot added the stale Issue is stale and subject to automatic closing label Nov 28, 2023
@mihaitodor
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@github-actions github-actions bot removed the stale Issue is stale and subject to automatic closing label Nov 29, 2023
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github-actions bot commented Mar 2, 2024

This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 7 days.

@github-actions github-actions bot added the stale Issue is stale and subject to automatic closing label Mar 2, 2024
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This issue was closed because it has been stalled for 7 days with no activity.

@github-actions github-actions bot closed this as not planned Won't fix, can't repro, duplicate, stale Mar 11, 2024
@jsstevenson jsstevenson added keep alive exempt issue from staleness checks and removed stale Issue is stale and subject to automatic closing closed-by-stale labels Mar 11, 2024
@jsstevenson jsstevenson reopened this Mar 11, 2024
@davmlaw davmlaw mentioned this issue Mar 19, 2024
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@mihaitodor @jsstevenson