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Error while populating kegg #23

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Crispae opened this issue Feb 13, 2023 · 3 comments
Open

Error while populating kegg #23

Crispae opened this issue Feb 13, 2023 · 3 comments

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@Crispae
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Crispae commented Feb 13, 2023 •
edited

While running kegg_manager.populate(), it throws error after 3hrs of loading
kegg error
@Crispae Crispae changed the title Error while pouplating kegg Error while populating kegg Feb 13, 2023
@ddomingof
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Hi, it seems a problem with the last json file. Can you try again to run the same command to see if it contains without downloading that file? Try also to remove that file if it doesnt work.
It seems to be a problem happening on windows

@Crispae
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Crispae commented Feb 14, 2023

Hi, thanks for your reply. Yes, i am running this on windows and using REPL to import and run this command. I am trying to install in ubuntu docker container it`s giving error in import.
Screenshot 2023-02-14 155514

@cthoyt
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cthoyt commented Feb 14, 2023

this is a sqlalchemy 2.0-related error, please install <2.0.0

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@cthoyt @ddomingof @Crispae