{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":774126538,"defaultBranch":"main","name":"bhattlab_workflows_nf","ownerLogin":"bhattlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-03-19T01:39:39.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/9373473?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1710812380.353459","currentOid":""},"activityList":{"items":[{"before":"00d053cda8b567b3370970e27d08094742b0c3b6","after":"0f804a63166afe8764c6d55913657f4c2be05a48","ref":"refs/heads/main","pushedAt":"2024-04-22T16:33:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"ce2a921d6085b651f8edd78a655f9daa72fbd3aa","after":"00d053cda8b567b3370970e27d08094742b0c3b6","ref":"refs/heads/main","pushedAt":"2024-04-16T20:34:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"export the versions correctly.","shortMessageHtmlLink":"export the versions correctly."}},{"before":"ace14d7d838f5369ad727cc4118098a924f9403a","after":"ce2a921d6085b651f8edd78a655f9daa72fbd3aa","ref":"refs/heads/main","pushedAt":"2024-04-16T20:33:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix long-read binning (hopefully).","shortMessageHtmlLink":"fix long-read binning (hopefully)."}},{"before":"a9951a09312452c83cb0a4c1d14b5a523127221e","after":"ace14d7d838f5369ad727cc4118098a924f9403a","ref":"refs/heads/main","pushedAt":"2024-04-16T17:32:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"check out LR binning prep channels.","shortMessageHtmlLink":"check out LR binning prep channels."}},{"before":"82b5410685372dc5df652227247041efb4b6e78e","after":"a9951a09312452c83cb0a4c1d14b5a523127221e","ref":"refs/heads/main","pushedAt":"2024-04-16T17:26:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix output of the assembly location.","shortMessageHtmlLink":"fix output of the assembly location."}},{"before":"906c5b1ede32372c69922ed7fbe75bf659b78c2f","after":"82b5410685372dc5df652227247041efb4b6e78e","ref":"refs/heads/main","pushedAt":"2024-04-16T17:25:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix lr bam creation.","shortMessageHtmlLink":"fix lr bam creation."}},{"before":"52a9d60de87db946f6c3ff7ce0ba98969c1a9d81","after":"906c5b1ede32372c69922ed7fbe75bf659b78c2f","ref":"refs/heads/main","pushedAt":"2024-04-16T00:19:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"bugfix for collating the location of the cleaned reads.","shortMessageHtmlLink":"bugfix for collating the location of the cleaned reads."}},{"before":"b8df39fa169f1a7554f02c3ee9b3fa73f6413393","after":"52a9d60de87db946f6c3ff7ce0ba98969c1a9d81","ref":"refs/heads/main","pushedAt":"2024-04-15T22:21:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"updated documentation.","shortMessageHtmlLink":"updated documentation."}},{"before":"c9a85fb1e9e0215b1dbf166fec4b14d5e7b51069","after":"b8df39fa169f1a7554f02c3ee9b3fa73f6413393","ref":"refs/heads/main","pushedAt":"2024-04-15T21:50:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"add some documentation for using the pipeline with long reads","shortMessageHtmlLink":"add some documentation for using the pipeline with long reads"}},{"before":"2b6be3aa8c77aed836bb24092586ae5427526f39","after":"c9a85fb1e9e0215b1dbf166fec4b14d5e7b51069","ref":"refs/heads/main","pushedAt":"2024-04-15T21:18:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"binning for long reads as well.","shortMessageHtmlLink":"binning for long reads as well."}},{"before":"d9fd0b26e9d484995dea51acf3817d57b6bf82da","after":"2b6be3aa8c77aed836bb24092586ae5427526f39","ref":"refs/heads/main","pushedAt":"2024-04-09T22:34:29.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix host genome location on SCG.","shortMessageHtmlLink":"fix host genome location on SCG."}},{"before":"a4158b3c0aa98ac4d50349646aed901ff4d0df08","after":"d9fd0b26e9d484995dea51acf3817d57b6bf82da","ref":"refs/heads/main","pushedAt":"2024-04-09T18:53:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix input channels for combination process.","shortMessageHtmlLink":"fix input channels for combination process."}},{"before":"d4399a8664e9743e29ee99282db0d0dded04737f","after":"a4158b3c0aa98ac4d50349646aed901ff4d0df08","ref":"refs/heads/main","pushedAt":"2024-04-09T18:50:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"hopefully last typo.","shortMessageHtmlLink":"hopefully last typo."}},{"before":"f907af005c9fc87faf9df45d942520001331d894","after":"d4399a8664e9743e29ee99282db0d0dded04737f","ref":"refs/heads/main","pushedAt":"2024-04-09T18:49:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix other typo.","shortMessageHtmlLink":"fix other typo."}},{"before":"286e9b015dec248102fe4decef92f07b4fdfde81","after":"f907af005c9fc87faf9df45d942520001331d894","ref":"refs/heads/main","pushedAt":"2024-04-09T18:47:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"typo for nanoplot.","shortMessageHtmlLink":"typo for nanoplot."}},{"before":"37a07aa5588a37684bf04494b771a47744d45e07","after":"286e9b015dec248102fe4decef92f07b4fdfde81","ref":"refs/heads/main","pushedAt":"2024-04-09T18:44:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix hostremoval for LR.","shortMessageHtmlLink":"fix hostremoval for LR."}},{"before":"01d8ec7331cbf60c0d813cff45bd388725a0faa6","after":"37a07aa5588a37684bf04494b771a47744d45e07","ref":"refs/heads/main","pushedAt":"2024-04-09T18:42:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"add long read preprocessing pipeline.","shortMessageHtmlLink":"add long read preprocessing pipeline."}},{"before":"86a5a3fa243717de003fd5151fd477e61e0f001c","after":"01d8ec7331cbf60c0d813cff45bd388725a0faa6","ref":"refs/heads/main","pushedAt":"2024-03-26T21:22:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"added binning doc.","shortMessageHtmlLink":"added binning doc."}},{"before":"2241059b720fa14e3c46380051248c72a3948b88","after":"86a5a3fa243717de003fd5151fd477e61e0f001c","ref":"refs/heads/main","pushedAt":"2024-03-26T17:34:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"bugfix for bakta: do not delete the contigs file.","shortMessageHtmlLink":"bugfix for bakta: do not delete the contigs file."}},{"before":"a1859ce4c25bf3beb50e0608bd2c8d6453dfd32a","after":"2241059b720fa14e3c46380051248c72a3948b88","ref":"refs/heads/main","pushedAt":"2024-03-25T17:43:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"added assembly documentation.","shortMessageHtmlLink":"added assembly documentation."}},{"before":"7faf320cb7a9043b5cf5ea74b0a95d09eb3a573c","after":"a1859ce4c25bf3beb50e0608bd2c8d6453dfd32a","ref":"refs/heads/main","pushedAt":"2024-03-22T20:53:31.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"added gtdb database location.","shortMessageHtmlLink":"added gtdb database location."}},{"before":"918e0f5fce14fc3d1692659a57b1a23f18ddc3b0","after":"7faf320cb7a9043b5cf5ea74b0a95d09eb3a573c","ref":"refs/heads/main","pushedAt":"2024-03-22T20:51:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"remove the view command.","shortMessageHtmlLink":"remove the view command."}},{"before":"73dc2a84c6f7b6d69f24e4d49453d3cf19bbeb71","after":"918e0f5fce14fc3d1692659a57b1a23f18ddc3b0","ref":"refs/heads/main","pushedAt":"2024-03-22T16:55:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"tabs instead of spaces.","shortMessageHtmlLink":"tabs instead of spaces."}},{"before":"d6dc3c505dccc3eb940d087369e9459ce514b394","after":"73dc2a84c6f7b6d69f24e4d49453d3cf19bbeb71","ref":"refs/heads/main","pushedAt":"2024-03-22T16:42:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"add new container for genomad.","shortMessageHtmlLink":"add new container for genomad."}},{"before":"72689c8676acfe46d905e70f9a7483345d7addfd","after":"d6dc3c505dccc3eb940d087369e9459ce514b394","ref":"refs/heads/main","pushedAt":"2024-03-22T16:41:37.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"import checkv twice, correct input process name.","shortMessageHtmlLink":"import checkv twice, correct input process name."}},{"before":"1cb443df43a167d4d7bf2b35de1fedc41bdc80e6","after":"72689c8676acfe46d905e70f9a7483345d7addfd","ref":"refs/heads/main","pushedAt":"2024-03-22T04:19:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"first pass for the viral annotation.","shortMessageHtmlLink":"first pass for the viral annotation."}},{"before":"30e379eb3be4ad0161e0f6e53a13eb56300a7e96","after":"1cb443df43a167d4d7bf2b35de1fedc41bdc80e6","ref":"refs/heads/main","pushedAt":"2024-03-22T00:42:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix link.","shortMessageHtmlLink":"fix link."}},{"before":"489a9830e622b0e7402a3e071876ec34a94fbf4a","after":"30e379eb3be4ad0161e0f6e53a13eb56300a7e96","ref":"refs/heads/main","pushedAt":"2024-03-22T00:41:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"fix link?","shortMessageHtmlLink":"fix link?"}},{"before":"a1b673b07115bf11c8942e58d54885e995e2b6c9","after":"489a9830e622b0e7402a3e071876ec34a94fbf4a","ref":"refs/heads/main","pushedAt":"2024-03-22T00:40:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"added some documentation (more to follow).","shortMessageHtmlLink":"added some documentation (more to follow)."}},{"before":"6e941c2d50bc70ed3da75f63145efd3cd5ffab72","after":"a1b673b07115bf11c8942e58d54885e995e2b6c9","ref":"refs/heads/main","pushedAt":"2024-03-22T00:39:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakob-wirbel","name":"Jakob","path":"/jakob-wirbel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13694171?s=80&v=4"},"commit":{"message":"bakta needs more time.","shortMessageHtmlLink":"bakta needs more time."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAENzovLAA","startCursor":null,"endCursor":null}},"title":"Activity ยท bhattlab/bhattlab_workflows_nf"}