Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Is there an option like blastp to set word size for short sequences? #802

Open
graa4 opened this issue Apr 16, 2024 · 1 comment
Open

Is there an option like blastp to set word size for short sequences? #802

graa4 opened this issue Apr 16, 2024 · 1 comment

Comments

@graa4
Copy link

graa4 commented Apr 16, 2024

Hi, I would like to know if the length of the amino acid sequence is only 40 to 50, how to set parameters such as word size like blastp for such a sequence?
@bbuchfink
Copy link
Owner

No, this corresponds to different sensitivity modes of diamond.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@bbuchfink @graa4