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Diamond view throws segmentation fault (core dumped) error #796

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SaimMomin12 opened this issue Mar 14, 2024 · 1 comment
Open

Diamond view throws segmentation fault (core dumped) error #796

SaimMomin12 opened this issue Mar 14, 2024 · 1 comment

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@SaimMomin12
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Hi,

I have a Diamond DAA file (ultimately small in size) which was the ouput from Diamond blastx tool using the lastest version.

When I try to convert the DAA file to XML file using the following command, I get segmentation fault(core dumped) error.

diamond view --threads 8 --daa results.daa --outfmt 5 --max-target-seqs 1 --out result.xml

Error traceback as follows

#CPU threads: 8
Scoring parameters: (Matrix=blosum62 Lambda=0.267 K=0.041 Penalties=11/1)
DB sequences = 2
DB sequences used = 2
DB letters = 568
#Target sequences to report alignments for: 1
Segmentation fault (core dumped)

Any suggestions how can this be solved?

@bbuchfink
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If you provide a copy of your DAA file I can have a look.

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