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problem running GLM with conditions created from markerinfo #672

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dominikbach opened this issue Mar 21, 2024 · 0 comments · May be fixed by #695
Open

problem running GLM with conditions created from markerinfo #672

dominikbach opened this issue Mar 21, 2024 · 0 comments · May be fixed by #695

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@dominikbach
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potentially linked to #670 via a faulty markerinfo structure?

------------------------------------------------------------------------
21-Mar-2024 09:14:49 - Running job #1
------------------------------------------------------------------------
21-Mar-2024 09:14:49 - Running 'GLM for SCR'
Warning: markerinfo must be a field in the struct 
> In pspm_get_timing (line 341)
In pspm_check_model (line 263)
In pspm_glm (line 164)
In pspm_cfg_run_glm_scr (line 26)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1706)
In cfg_util (line 966)
In cfg_ui>MenuFileRun_Callback (line 705)
In gui_mainfcn (line 95)
In cfg_ui (line 53) 
21-Mar-2024 09:14:50 - Done    'GLM for SCR'
21-Mar-2024 09:14:50 - Done

Matlabbatch script:

matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.modelfile = 'test';
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.outdir = {'/Users/dominik/Documents/PublicData/Sandbox'};
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.chan.chan_def = 0;
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.timeunits.seconds = 'seconds';
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.session.datafile = {'/Users/dominik/Documents/PublicData/Sandbox/pspm_PP12.mat'};
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.session.missing.no_epochs = 0;
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.session.data_design.marker_cond.marker_values.marker_values_val = 1;
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.session.data_design.marker_cond.cond_names = {'test'};
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.session.nuisancefile = {''};
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.latency.fixed = 'fixed';
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.bf.scrf1 = 1;
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.norm = false;
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.filter.def = 0;
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.exclude_missing.excl_no = 'No';
matlabbatch{1}.pspm{1}.first_level{1}.scr{1}.glm_scr.overwrite = false;
@dominikbach dominikbach linked a pull request Apr 20, 2024 that will close this issue
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