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Greetings, we have a number of VCF files generated by non-MNV aware callers, but that do include phased genotypes and phase sets. Does (or can) Vt include a utility to compose MNVs out of SNVs that are in phase and within the same codon?
The text was updated successfully, but these errors were encountered:
Sorry, let me include an example. Here is an example where these two VCF rows could potentially be 'composed' into an MNV in order to obtain a more accurate molecular consequence prediction:
chr11 47622718 . A C 136.77 PASS AC=1;AF=0.500 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:29,6:36:99:0|1:47622718_A_C:165,0,1200:47622718
chr11 47622719 . C T 133.77 PASS AC=1;AF=0.500 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:30,6:37:99:0|1:47622718_A_C:162,0,1242:47622718
Greetings, we have a number of VCF files generated by non-MNV aware callers, but that do include phased genotypes and phase sets. Does (or can) Vt include a utility to compose MNVs out of SNVs that are in phase and within the same codon?
The text was updated successfully, but these errors were encountered: