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Is there any way to limit the amount of memory vt norm uses? Currently I'm trying to remove the info fields from a massive vcf (>150GB) and the process just dies.
rminfo v0.5
options: input VCF file -
[o] output VCF file reduced/gnomad.genomes.v3.1.1.sites.chr11.vcf
[q] quiet false
[t] info tags popmax,faf95_popmax,AC_non_v2_XX,AN_non_v2_XX and 901 other values
[E::idx_find_and_load] Could not retrieve index file for '-'
Killed
Any way to throttle this? I've tried streaming in the file using bcftools as you can see. If I could set a max mem option then that would be great.
The text was updated successfully, but these errors were encountered:
Is there any way to limit the amount of memory vt norm uses? Currently I'm trying to remove the info fields from a massive vcf (>150GB) and the process just dies.
Any way to throttle this? I've tried streaming in the file using bcftools as you can see. If I could set a max mem option then that would be great.
The text was updated successfully, but these errors were encountered: