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intervene venn doesn't work with "--bedtools-option s=True" #28

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kerenzhou062 opened this issue Dec 2, 2019 · 2 comments
Open

intervene venn doesn't work with "--bedtools-option s=True" #28

kerenzhou062 opened this issue Dec 2, 2019 · 2 comments

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@kerenzhou062
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Can intervene be complemented with "bedtools intersect -s "? (that is intersecting peaks by strand)

@asntech
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asntech commented Dec 2, 2019

You should use like this:
intervene venn -i *.bed --bedtools-option s
instead of s=True or -s

@kerenzhou062
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kerenzhou062 commented Dec 2, 2019

I tried run intervene venn --bedtools-options s, but it returned the same result with that without --bedtools-options s.

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