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test_data_pipeline.py is not working #392

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Ericzhang1 opened this issue Jan 2, 2024 · 3 comments
Open

test_data_pipeline.py is not working #392

Ericzhang1 opened this issue Jan 2, 2024 · 3 comments

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@Ericzhang1
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When I try to run the following command under test folder:

python test_data_pipeline.py

I have met the following issues:

======================================================================
ERROR: test_fasta_compare (main.TestDataPipeline)

Traceback (most recent call last):
File "test_data_pipeline.py", line 56, in test_fasta_compare
template_featurizer = TemplateHitFeaturizer(
TypeError: Can't instantiate abstract class TemplateHitFeaturizer with abstract methods get_templates


Ran 1 test in 0.017s

I am wondering what went wrong ?

@christinaflo
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Which branch are you using? Asking because this is an abstract method in the multimer branch but not in main.

@Ericzhang1
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Yes, I am using multimer branch.

@christinaflo
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What commit are you using? The latest version does not use TemplateHitFeaturizer in the test.

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