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LitReviewR.bib
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LitReviewR.bib
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@Manual{R_software,
title = {\texttt{R}: A Language and Environment for Statistical Computing},
author = {{\texttt{R} Core Team}},
organization = {\texttt{R} Foundation for Statistical Computing},
address = {Vienna},
year = {2018},
url = {https://www.R-project.org/},
}
@Article{R_animation,
title = {{animation}: An \texttt{R} package for creating animations and demonstrating stat\-ist\-ical methods},
author = {Yihui Xie},
journal = {Journal of Statistical Software},
year = {2013},
volume = {53},
number = {1},
pages = {1--27},
url = {http://www.jstatsoft.org/v53/i01/},
}
@Article{R_ape,
title = {{APE}: Analyses of phylogenetics and evolution in \texttt{R} language},
author = {E. Paradis and J. Claude and K. Strimmer},
journal = {Bioinformatics},
year = {2004},
volume = {20},
pages = {289-290},
}
@Manual{R_broom,
title = {broom: Convert Statistical Analysis Objects into Tidy Tibbles},
author = {David Robinson and Alex Hayes},
year = {2018},
note = {\texttt{R} package version 0.5.0. Available from \url{https://CRAN.R-project.org/package=broom}},
url = {https://CRAN.R-project.org/package=broom},
}
@Manual{R_CCA,
title = {CCA: Canonical Correlation Analysis},
author = {Ignacio Gonz\'{a}lez and S\'{e}bastien D\'{e}jean},
year = {2012},
note = {\texttt{R} package version 1.2. Available from \url{https://CRAN.R-project.org/package=CCA}}
}
@Manual{R_devtools,
title = {devtools: Tools to Make Developing R Packages Easier},
author = {Hadley Wickham and Winston Chang},
year = {2017},
note = {\texttt{R} package version 1.13.6. Available from \url{https://CRAN.R-project.org/package=devtools}},
}
@Manual{R_dplyr,
title = {dplyr: A Grammar of Data Manipulation},
author = {Hadley Wickham and Romain Francois and Lionel Henry and Kirill M{\"u}ller},
year = {2017},
note = {\texttt{R} package version 0.7.6. Available from \url{https://CRAN.R-project.org/package=dplyr}},
}
@Manual{R_EFDR,
title = {EFDR: Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images},
author = {Andrew Zammit-Mangion and Hsin-Cheng Huang},
url = {https://CRAN.R-project.org/package=EFDR},
year = {2015},
note = {\texttt{R} package version 0.1.1. Available from \url{https://CRAN.R-project.org/package=EFDR}}
}
@Manual{R_expm,
title = {expm: Matrix Exponential, Log, ``etc''},
author = {Vincent Goulet and Christophe Dutang and Martin Maechler and David Firth and Marina Shapira and Michael Stadelmann},
year = {2017},
note = {\texttt{R} package version 0.999-2. Available from \url{https://CRAN.R-project.org/package=expm}},
}
@Manual{R_fields,
title = {fields: Tools for spatial data},
author = {Nychka, D and Furrer, R and Paige, J and Sain, S},
note = {\texttt{R} package version 9.6. Available from \url{www.image.ucar.edu/fields}},
year = {2015}
}
@Manual{R_FRK,
title = {FRK: Fixed Rank Kriging},
author = {Andrew Zammit-Mangion},
year = {2018},
note = {\texttt{R} package version 0.2.2. Available from \url{https://CRAN.R-project.org/package=FRK}},
}
@book{R_ggplot2,
title={ggplot2: Elegant Graphics for Data Analysis},
author={Wickham, Hadley},
year={2016},
publisher={Springer},
address={New York},
edition={2}
}
@Article{R_ggmap,
author = {David Kahle and Hadley Wickham},
title = {ggmap: Spatial Visualization with ggplot2},
journal = {R Journal},
year = {2013},
volume = {5},
number = {1},
pages = {144--161},
url = {http://journal.r-project.org/archive/2013-1/kahle-wickham.pdf},
}
@Manual{R_ggquiver,
title = {ggquiver: Quiver Plots for 'ggplot2'},
author = {Mitchell O'Hara-Wild},
year = {2017},
note = {\texttt{R} package version 0.1.0. Available from \url{https://CRAN.R-project.org/package=ggquiver}},
}
@Manual{R_gridExtra,
title = {gridExtra: Miscellaneous Functions for ``Grid'' Graphics},
author = {Baptiste Auguie},
year = {2016},
note = {\texttt{R} package version 2.3. Available from \url{https://CRAN.R-project.org/package=gridExtra}},
}
@Article{R_gstat,
title = {Spatio-temporal interpolation using gstat},
author = {Benedikt Gr{\"a}ler and Edzer Pebesma and Gerard Heuvelink},
year = {2016},
journal = {R Journal},
volume = {8},
issue = {1},
pages = {204-218},
url = {https://journal.r-project.org/archive/2016-1/na-pebesma-heuvelink.pdf},
}
@Manual{R_IDE,
title = {IDE: Integro-Difference Equation Spatio-Temporal Models},
author = {Andrew Zammit-Mangion},
note = {\texttt{R} package version 0.2.0. Available from \url{https://CRAN.R-project.org/package=IDE}},
year = 2018
}
@Article{R_INLA,
title = {Bayesian spatial modelling with \texttt{R}-{INLA}},
author = {Finn Lindgren and H{\aa}vard Rue},
journal = {Journal of Statistical Software},
year = {2015},
volume = {63},
number = {19},
pages = {1--25},
url = {http://www.jstatsoft.org/v63/i19/},
}
@book{R_knitr,
title={Dynamic Documents with R and knitr},
author={Xie, Yihui},
year={2015},
publisher={Chapman \& Hall/CRC},
address = {Boca Raton, FL},
edition = {second}
}
@Book{R_lattice,
title = {Lattice: Multivariate Data Visualization with R},
author = {Deepayan Sarkar},
publisher = {Springer},
address = {New York},
year = {2008},
url = {http://lmdvr.r-forge.r-project.org}
}
@Manual{R_leaps,
title = {leaps: Regression Subset Selection},
author = {Thomas Lumley},
year = {2017},
note = {\texttt{R} package version 3.0, based on Fortran code by A. Miller. Available from \url{https://CRAN.R-project.org/package=leaps}},
}
@Article{R_lmtest,
title = {Diagnostic checking in regression relationships},
author = {Achim Zeileis and Torsten Hothorn},
journal = {R News},
year = {2002},
volume = {2},
number = {3},
pages = {7--10},
url = {https://CRAN.R-project.org/doc/Rnews/},
}
@Manual{R_maps,
title = {maps: Draw Geographical Maps},
author = {Becker, R.~A. and Wilks, A.~R.},
year = {2017},
note = {\texttt{R} package version 3.3.0. (R version by Brownrigg, R. Enhancements by Minka, T. P. and Deckmyn, A.) Available from \url{https://CRAN.R-project.org/package=maps}},
}
@Manual{R_maptools,
title = {maptools: Tools for Reading and Hand\-ling Spatial Objects},
author = {Roger Bivand and Nicholas Lewin-Koh},
year = {2017},
note = {\texttt{R} package version 0.9-3. Available from \url{https://CRAN.R-project.org/package=maptools}},
}
@Manual{R_Matrix,
title = {Matrix: Sparse and Dense Matrix Classes and Methods},
author = {Douglas Bates and Martin Maechler},
year = {2017},
note = {\texttt{R} package version 1.2-14. Available from \url{https://CRAN.R-project.org/package=Matrix}},
}
@Book{R_mgcv,
title = {Generalized Additive Models: An Introduction with R},
year = {2017},
author = {S. N. Wood},
edition = {2},
publisher = {Chapman \& Hall/CRC},
address = {Boca Raton, FL}
}
@Manual{R_nlme,
title = {{nlme}: Linear and Nonlinear Mixed Effects Models},
author = {Jose Pinheiro and Douglas Bates and Saikat DebRoy and Deepayan Sarkar and {R Core Team}},
year = {2017},
note = {\texttt{R} package version 3.1-131. Available from \url{https://CRAN.R-project.org/package=nlme}},
}
@Manual{R_plotly,
title = {plotly: Create Interactive Web Graphics via 'plotly.js'},
author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
year = {2017},
note = {\texttt{R} package version 4.7.1. Available from \url{https://CRAN.R-project.org/package=plotly}},
}
@Article{R_plyr,
title = {The split-apply-combine strategy for data analysis},
author = {Hadley Wickham},
journal = {Journal of Stat\-ist\-ical Software},
year = {2011},
volume = {40},
number = {1},
pages = {1--29},
url = {http://www.jstatsoft.org/v40/i01/},
}
@Manual{R_purrr,
title = {purrr: Functional Programming Tools},
author = {Lionel Henry and Hadley Wickham},
year = {2017},
note = {\texttt{R} package version 0.2.5. Available from \url{https://CRAN.R-project.org/package=purrr}},
}
@Manual{R_RColorBrewer,
title = {RColorBrewer: ColorBrewer Palettes},
author = {Erich Neuwirth},
year = {2014},
note = {\texttt{R} package version 1.1-2. Available from \url{https://CRAN.R-project.org/package=RColorBrewer}},
}
@Manual{R_scoringRules,
title = {scoringRules: Scoring Rules for Parametric and Simulated Distribution
Forecasts},
author = {Alexander Jordan and Fabian Krueger and Sebastian Lerch},
year = {2017},
note = {\texttt{R} package version 0.9.5. Available from \url{https://CRAN.R-project.org/package=scoringRules}},
}
@Book{R_sppackage,
author = {Roger S. Bivand and Edzer Pebesma and Virgilio Gomez-Rubio},
title = {Applied Spatial Data Analysis with \texttt{R}},
edition = {second},
year = {2013},
publisher = {Springer},
address = {New York},
url = {http://www.asdar-book.org/},
}
@Article{R_spacetime,
title = {{spacetime}: Spatio-temporal data in \texttt{R}},
author = {Edzer Pebesma},
journal = {Journal of Statistical Software},
year = {2012},
volume = {51},
number = {7},
pages = {1--30},
url = {http://www.jstatsoft.org/v51/i07/},
}
@Manual{R_SpatialVx,
title = {SpatialVx: Spatial Forecast Verification},
author = {Eric Gilleland},
year = {2018},
note = {\texttt{R} package version 0.6-3. Available from \url{https://CRAN.R-project.org/package=SpatialVx}},
}
@Manual{R_SpatioTemporal,
title = {SpatioTemporal: Spatio-Temporal Model Estimation},
author = {Johan Lindstrom and Adam Szpiro and Paul D. Sampson and Silas Bergen and Assaf P. Oron},
year = {2013},
note = {\texttt{R} package version 1.1.7. Available from \url{https://CRAN.R-project.org/package=SpatioTemporal}},
}
@Manual{R_SpecsVerification,
title = {SpecsVerification: Forecast Verification Routines for Ensemble Forecasts of Weather
and Climate},
author = {Stefan Siegert},
year = {2017},
note = {\texttt{R} package version 0.5-2. Available from \url{https://CRAN.R-project.org/package=SpecsVerification}},
}
@Manual{R_stargazer,
title = {stargazer: Well-Formatted Regression and Summary Statistics Tables},
author = {Marek Hlavac},
year = {2015},
note = {\texttt{R} package version 5.2.2. Available from \url{http://CRAN.R-project.org/package=stargazer}},
organization = {Harvard University},
address = {Cambridge, MA},
}
@Manual{R_STRbook,
title = {STRbook: Supplementary Package for Book on ST Modelling with R},
author = {Andrew Zammit-Mangion},
note = {\texttt{R} package version 0.1.0. Available from \url{https://github.com/andrewzm/STRbook}},
year = 2018
}
@Manual{R_tidyr,
title = {tidyr: Easily Tidy Data with ``spread()'' and ``gather()'' Functions},
author = {Hadley Wickham and Lionel Henry},
year = {2017},
note = {\texttt{R} package version 0.8.1. Available from \url{https://CRAN.R-project.org/package=tidyr}},
}
@Manual{R_verification,
title = {verification: Weather Forecast Verification Utilities},
author = {{NCAR -- Research Applications Laboratory}},
year = {2015},
note = {\texttt{R} package version 1.42. Available from \url{https://CRAN.R-project.org/package=verification}},
}
@Manual{R_xtable,
title = {xtable: Export Tables to LaTeX or HTML},
author = {David B. Dahl},
year = {2016},
note = {\texttt\texttt{R} package version 1.8-2. Available from \url{https://CRAN.R-project.org/package=xtable}},
}