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DESCRIPTION
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DESCRIPTION
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Package: HTSFilter
Type: Package
Title: Filter replicated high-throughput transcriptome sequencing data
Version: 1.31.2
Date: 2020-12-04
Authors@R: c(
person(given="Andrea",
family="Rau",
email="andrea.rau@inrae.fr",
role=c("cre", "aut"),
comment = c(ORCID = "0000-0001-6469-488X")),
person(given="Melina",
family="Gallopin",
role="ctb"),
person(given="Gilles",
family="Celeux",
role="ctb"),
person(given="Florence",
family="Jaffrézic",
role="ctb"))
Depends:
R (>= 4.0.0)
Imports:
edgeR,
DESeq2,
BiocParallel,
Biobase,
utils, stats, grDevices, graphics, methods
Suggests:
EDASeq,
testthat,
knitr,
rmarkdown,
BiocStyle
Description: This package implements a filtering procedure for
replicated transcriptome sequencing data based on a global
Jaccard similarity index in order to identify genes with low,
constant levels of expression across one or more experimental
conditions.
License: Artistic-2.0
LazyLoad: yes
biocViews: Sequencing, RNASeq, Preprocessing, DifferentialExpression,
GeneExpression, Normalization, ImmunoOncology
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Encoding: UTF-8