{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":143471288,"defaultBranch":"master","name":"ivar","ownerLogin":"andersen-lab","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2018-08-03T20:37:53.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/16296068?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1714076286.0","currentOid":""},"activityList":{"items":[{"before":"7d7e987b57a17de7f3067448359ff8c12c7322aa","after":"cea563d4d4fc7e6684c1a2bcdb0e2fd2723e7236","ref":"refs/heads/v_2.0","pushedAt":"2024-05-18T18:01:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"adding in amplicon removal","shortMessageHtmlLink":"adding in amplicon removal"}},{"before":"8b7752ca8f3b080d54341500908468988cc74fcd","after":"7d7e987b57a17de7f3067448359ff8c12c7322aa","ref":"refs/heads/v_2.0","pushedAt":"2024-05-01T17:33:34.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"minor changes such that deletion positions are correct and maximum cluster is selected correctly","shortMessageHtmlLink":"minor changes such that deletion positions are correct and maximum cl…"}},{"before":"a8c0a70a58af039d0b3ea58c8942df8e80aa8f75","after":"8b7752ca8f3b080d54341500908468988cc74fcd","ref":"refs/heads/v_2.0","pushedAt":"2024-04-29T18:14:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"updating the sequence name in the fasta file to match prefix","shortMessageHtmlLink":"updating the sequence name in the fasta file to match prefix"}},{"before":null,"after":"9703e61e0797f1ad48c4faf02efca578f5436dac","ref":"refs/heads/issue_175","pushedAt":"2024-04-25T20:18:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"adding fix for case where unpaired reads have forward primers trimmed","shortMessageHtmlLink":"adding fix for case where unpaired reads have forward primers trimmed"}},{"before":"8d5b5540d80b1068a6e0ebc786c5e904182e598e","after":"a8c0a70a58af039d0b3ea58c8942df8e80aa8f75","ref":"refs/heads/v_2.0","pushedAt":"2024-04-22T23:49:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"fix for noise resampling","shortMessageHtmlLink":"fix for noise resampling"}},{"before":"38d930c453d21182123bd301ac0bebd567e38632","after":"8d5b5540d80b1068a6e0ebc786c5e904182e598e","ref":"refs/heads/v_2.0","pushedAt":"2024-04-22T23:20:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"removing line for read filter based on soft clipping percent","shortMessageHtmlLink":"removing line for read filter based on soft clipping percent"}},{"before":"7ed0e41d5709fb88231bc2fc521a4a8d573c3a83","after":"38d930c453d21182123bd301ac0bebd567e38632","ref":"refs/heads/v_2.0","pushedAt":"2024-04-18T04:37:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"redoing noise resampler code","shortMessageHtmlLink":"redoing noise resampler code"}},{"before":"bf7de310170c20727ab5a1dbde3e91dd4a019d7c","after":"7ed0e41d5709fb88231bc2fc521a4a8d573c3a83","ref":"refs/heads/v_2.0","pushedAt":"2024-04-17T18:31:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"fixing minor error in deletion counting","shortMessageHtmlLink":"fixing minor error in deletion counting"}},{"before":"5deec1086e1365dc3ec4ed7baf00289a6d58584f","after":"bf7de310170c20727ab5a1dbde3e91dd4a019d7c","ref":"refs/heads/v_2.0","pushedAt":"2024-04-10T22:56:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"fix variants assignment","shortMessageHtmlLink":"fix variants assignment"}},{"before":"cf33fb43c67b6fa83570ded54cde93e1cca6e257","after":"5deec1086e1365dc3ec4ed7baf00289a6d58584f","ref":"refs/heads/v_2.0","pushedAt":"2024-04-05T20:54:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"starting engineering for consenseus call","shortMessageHtmlLink":"starting engineering for consenseus call"}},{"before":"f0f4cc7e53fdda35a6c1899a3879457d5a5c2b3b","after":null,"ref":"refs/heads/cmake","pushedAt":"2024-03-30T02:58:32.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"gkarthik","name":"Karthik","path":"/gkarthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/798263?s=80&v=4"}},{"before":"c8f464b6d523fcb468c72950609f4d9606011602","after":"cf33fb43c67b6fa83570ded54cde93e1cca6e257","ref":"refs/heads/v_2.0","pushedAt":"2024-03-29T21:23:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"changing the way means are set, removing excess code","shortMessageHtmlLink":"changing the way means are set, removing excess code"}},{"before":"bcdbbff7f22f72c53bd02ae5518735c5af8c40e3","after":"c8f464b6d523fcb468c72950609f4d9606011602","ref":"refs/heads/v_2.0","pushedAt":"2024-03-26T18:46:18.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"Merge pull request #176 from andersen-lab/cmake\n\nCmake","shortMessageHtmlLink":"Merge pull request #176 from andersen-lab/cmake"}},{"before":"c41c8b5819aa0b42b4a68d91824fd6c8c69fc079","after":"f0f4cc7e53fdda35a6c1899a3879457d5a5c2b3b","ref":"refs/heads/cmake","pushedAt":"2024-03-25T00:22:01.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"gkarthik","name":"Karthik","path":"/gkarthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/798263?s=80&v=4"},"commit":{"message":"Removed faulty(?) initialization.","shortMessageHtmlLink":"Removed faulty(?) initialization."}},{"before":"60b367860d4608e09c7c5ab6c4fb01a692d2c076","after":"c41c8b5819aa0b42b4a68d91824fd6c8c69fc079","ref":"refs/heads/cmake","pushedAt":"2024-03-25T00:20:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gkarthik","name":"Karthik","path":"/gkarthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/798263?s=80&v=4"},"commit":{"message":"Corrected path to test files","shortMessageHtmlLink":"Corrected path to test files"}},{"before":null,"after":"60b367860d4608e09c7c5ab6c4fb01a692d2c076","ref":"refs/heads/cmake","pushedAt":"2024-03-25T00:18:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"gkarthik","name":"Karthik","path":"/gkarthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/798263?s=80&v=4"},"commit":{"message":"Init cmake","shortMessageHtmlLink":"Init cmake"}},{"before":"45e16fa7186c7ff9ea8a2bc8217f59d9956a2b72","after":"bcdbbff7f22f72c53bd02ae5518735c5af8c40e3","ref":"refs/heads/v_2.0","pushedAt":"2024-03-22T19:46:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"update prior to weekend","shortMessageHtmlLink":"update prior to weekend"}},{"before":"84187d7c1179d3b15f5c958bdfbe4ed65f6b08ef","after":"45e16fa7186c7ff9ea8a2bc8217f59d9956a2b72","ref":"refs/heads/v_2.0","pushedAt":"2024-03-02T03:09:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"minor adjustments on determining centroids based on clustering","shortMessageHtmlLink":"minor adjustments on determining centroids based on clustering"}},{"before":"88f041887e8798b695172056031c129e54a2d157","after":"84187d7c1179d3b15f5c958bdfbe4ed65f6b08ef","ref":"refs/heads/v_2.0","pushedAt":"2024-02-28T20:25:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"adding base for future consensus code, adjusting gmm metric","shortMessageHtmlLink":"adding base for future consensus code, adjusting gmm metric"}},{"before":"4600e339720730c75c3ebdba436d84c7bedbe70e","after":"88f041887e8798b695172056031c129e54a2d157","ref":"refs/heads/v_2.0","pushedAt":"2024-02-01T22:37:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"aic calculation","shortMessageHtmlLink":"aic calculation"}},{"before":"fbae713a064ce07c28ed13f346ec3e05309330a8","after":"4600e339720730c75c3ebdba436d84c7bedbe70e","ref":"refs/heads/v_2.0","pushedAt":"2024-02-01T18:50:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"adding in population estimate","shortMessageHtmlLink":"adding in population estimate"}},{"before":"90c3206d3ae75d2b1ea9e88f93ace74d1b5d0b9a","after":"fbae713a064ce07c28ed13f346ec3e05309330a8","ref":"refs/heads/v_2.0","pushedAt":"2024-02-01T02:25:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"adding in better param values for contam","shortMessageHtmlLink":"adding in better param values for contam"}},{"before":"9e8620d10cd4690bacb763df7e78631fccebf509","after":"90c3206d3ae75d2b1ea9e88f93ace74d1b5d0b9a","ref":"refs/heads/v_2.0","pushedAt":"2024-01-31T22:27:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"splitting contam and consensus commands","shortMessageHtmlLink":"splitting contam and consensus commands"}},{"before":"ff631bab73adf430e341efa31fb9474ee1f2e7d1","after":"9e8620d10cd4690bacb763df7e78631fccebf509","ref":"refs/heads/v_2.0","pushedAt":"2024-01-23T19:31:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"minor updates prior to branch switch","shortMessageHtmlLink":"minor updates prior to branch switch"}},{"before":"ac060bee6b88fe9fb8f20b626cbc6484fc41798e","after":"ff631bab73adf430e341efa31fb9474ee1f2e7d1","ref":"refs/heads/v_2.0","pushedAt":"2024-01-17T17:55:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"minor update before switching systems","shortMessageHtmlLink":"minor update before switching systems"}},{"before":"1902ac0747727e5f8be19f951b6b06619381c863","after":"ac060bee6b88fe9fb8f20b626cbc6484fc41798e","ref":"refs/heads/v_2.0","pushedAt":"2024-01-17T01:56:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"object oriented variant assignment, outlier detection, starting to write code to draw threshold","shortMessageHtmlLink":"object oriented variant assignment, outlier detection, starting to wr…"}},{"before":"6e0a75dbfcdebf15ac73ce62214941f932d3e2ba","after":"1902ac0747727e5f8be19f951b6b06619381c863","ref":"refs/heads/v_2.0","pushedAt":"2024-01-16T21:57:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"updating allele functions to account for allele being ref or not ref","shortMessageHtmlLink":"updating allele functions to account for allele being ref or not ref"}},{"before":"0dc84798bf7584df32103e127039091dbc79554d","after":"6e0a75dbfcdebf15ac73ce62214941f932d3e2ba","ref":"refs/heads/v_2.0","pushedAt":"2024-01-16T19:57:48.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"updating to mark alleles as ref/nonref","shortMessageHtmlLink":"updating to mark alleles as ref/nonref"}},{"before":"6989c5a3cdf18c9e443e083fa9da34d8624b3123","after":"0dc84798bf7584df32103e127039091dbc79554d","ref":"refs/heads/v_2.0","pushedAt":"2024-01-11T00:19:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"saving for the day, adding in outlier detection and variant assignment code","shortMessageHtmlLink":"saving for the day, adding in outlier detection and variant assignmen…"}},{"before":"3f88cba4d83778016b98581649b046b04c8f353b","after":"6989c5a3cdf18c9e443e083fa9da34d8624b3123","ref":"refs/heads/v_2.0","pushedAt":"2024-01-10T00:34:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cmaceves","name":"Chrissy Aceves","path":"/cmaceves","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/44014693?s=80&v=4"},"commit":{"message":"adding gmm code, post gmm assignment","shortMessageHtmlLink":"adding gmm code, post gmm assignment"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAETbqNZAA","startCursor":null,"endCursor":null}},"title":"Activity · andersen-lab/ivar"}