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How to build without SAM/htslib? #8

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alartin opened this issue Mar 29, 2017 · 1 comment
Open

How to build without SAM/htslib? #8

alartin opened this issue Mar 29, 2017 · 1 comment

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@alartin
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alartin commented Mar 29, 2017

The installation doc is not clear.
@alastair-droop
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Good morning.

Currently, fqtools can not be build without htslib, as it is required for reading SAM/BAM format. This functionality was requested by the paper reviewers. I believe that it would be relatively "easy" to allow building without the dependency and simply not allow reading FASTQ format directly from BAM/SAM. I'll look into it, but I'm really busy at the moment and can't promise a timescale.

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@alartin @alastair-droop