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mkdocs.yml
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mkdocs.yml
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# Project information
site_name: AFIDS Project
site_url: https://github.com/afids/afids-protocol
site_author:
site_description:
# Repository
repo_name: AFIDs on Github
repo_url: https://github.com/afids
edit_uri: https://github.com/afids/afids-protocol/blob/master/docs
issues_url: https://github.com/afids/afids-protocol/issues/new/choose
# Copyright
copyright: Copyright © The AFIDS Authors
dev_addr: 127.0.0.1:7000
use_directory_urls: false
# Configuration
theme:
name: material
custom_dir: material
# 404 page
static_templates:
- 404.html
# Don't include MkDocs' JavaScript
include_search_page: false
search_index_only: true
# Default values, taken from mkdocs_theme.yml
language: en
palette:
primary: black
accent: black
font:
text: Roboto
code: Roboto Mono
logo: img/logo.svg
favicon: img/favicon.png
extra_css:
- stylesheets/extra.css
# Plugins
plugins:
- search
extra_javascript:
- https://unpkg.com/mermaid@8.4.4/dist/mermaid.min.js
# Customization
extra:
social:
- icon: fontawesome/brands/github
link: https://github.com/afids
- icon: fontawesome/brands/twitter
link: https://twitter.com/afids_project
#- icon: fontawesome/brands/linkedin
# link:
#- icon: fontawesome/brands/instagram
# link:
# Extensions
markdown_extensions:
- markdown.extensions.admonition
- markdown.extensions.codehilite
- markdown.extensions.def_list
- markdown.extensions.footnotes
- markdown.extensions.meta
- markdown.extensions.toc:
permalink: true
- pymdownx.arithmatex
- pymdownx.betterem:
smart_enable: all
- pymdownx.caret
- pymdownx.critic
- pymdownx.details
- pymdownx.emoji:
emoji_index: !!python/name:materialx.emoji.twemoji
emoji_generator: !!python/name:materialx.emoji.to_svg
# - pymdownx.highlight:
# linenums_style: pymdownx-inline
- pymdownx.inlinehilite
- pymdownx.keys
- pymdownx.magiclink:
repo_url_shorthand: true
user: squidfunk
repo: mkdocs-material
- pymdownx.mark
- pymdownx.smartsymbols
- pymdownx.snippets:
check_paths: true
- pymdownx.superfences
- pymdownx.tabbed
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.tilde
# Page tree
nav:
- Home: index.md
- Working In 3D Slicer:
#- Installation: getting_started/installation_guide.md
- User Interface: 3d_slicer/ui_shortcuts.md
- Linear Transforms: 3d_slicer/linear_transforms.md
- Saving Slicer Scenes: 3d_slicer/saving_slicer_scenes.md
- The Protocol:
- Preparation: afids_protocol/preparation.md
- Human: afids_protocol/human_protocol.md
- Macaca: afids_protocol/macaca_protocol.md
- References: references.md