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Why does the same transcription factor have many regulons? #535
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Hi @M-jk22, From what I understood these are not the regulons yet, but the modules that were computed on the adjacencies graph. |
Hi @VincentGardeux, |
Hi @M-jk22, There is a preprocessing step, before running the AUCell, where the modules are integrated into regulons, by concatenating all target genes of each module associated with a certain TF, and taking the top motif (higher NES). Then, the AUCell is computed on this summarized TF. So I assume that in the CLI version, the preprocessing is generated while running the AUCell step. |
Hi @VincentGardeux, |
In the analysis results, I found that the same transcription factor might correspond to many target gene sets, each with its own AUC. So, can I understand that even the same TF can have many regulons, and that the TF activity in each cell is the result of processing these regulon scores?
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