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I got thousands of these warnings when I run pyscenic ctx on linux (ubuntu 22.04) CLI (conda environment):
pyscenic.transform - WARNING - Less than 80% of the genes in some_gene could be mapped to hg38__refseq-r80__500bp_up_and_100bp_down_tss.mc9nr.feather. Skipping this module.
or
pyscenic.transform - WARNING - Less than 80% of the genes in Regulon for some_regulon could be mapped to hg38__refseq-r80__10kb_up_and_down_tss.mc9nr.feather. Skipping this module.
I used the [mc_v10_clust] database and motifs-v10nr_clust-nr.hgnc-m0.001-o0.0.tbl, adjacency matrix from pyscenic grn command was created successfull.
My output file is empty. What I do wrong?
The text was updated successfully, but these errors were encountered:
I got thousands of these warnings when I run pyscenic ctx on linux (ubuntu 22.04) CLI (conda environment):
pyscenic.transform - WARNING - Less than 80% of the genes in some_gene could be mapped to hg38__refseq-r80__500bp_up_and_100bp_down_tss.mc9nr.feather. Skipping this module.
or
pyscenic.transform - WARNING - Less than 80% of the genes in Regulon for some_regulon could be mapped to hg38__refseq-r80__10kb_up_and_down_tss.mc9nr.feather. Skipping this module.
I used the [mc_v10_clust] database and motifs-v10nr_clust-nr.hgnc-m0.001-o0.0.tbl, adjacency matrix from pyscenic grn command was created successfull.
My output file is empty. What I do wrong?
The text was updated successfully, but these errors were encountered: