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Auto collect tiled mosaic #203

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campagnola opened this issue Feb 6, 2024 · 2 comments · May be fixed by #231
Open

Auto collect tiled mosaic #203

campagnola opened this issue Feb 6, 2024 · 2 comments · May be fixed by #231
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@campagnola
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campagnola commented Feb 6, 2024

Some way to automatically collect a tiled mosaic covering an entire slice

  • Autofocus
  • Find boundaries
  • Fill mosaic
  • Store as one .ma file or one folder full of images
  • Metadata: which slice is this a picture of?
@campagnola
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As part of this, the image sequencer used to collect Z stacks should be extended to allow xy mosaics as well. Ideally it should be possible to take a z stack at each location as well.
It probably won't be useful to try to do fast xy scanning the same way we collect fast z stacks.

@outofculture outofculture self-assigned this Apr 30, 2024
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outofculture commented May 10, 2024

  • make a shared api for CameraInterface and Camera(Device) that can be passed into the sequencer or anywhere else that wants Frames.
  • teach Frame to append to an existing file.
  • put the background-saving logic into a Frame object.
  • fix the background-saving bug that would occur if two images got saved into different folders that nevertheless share a background.
  • teach MultiPatchLog to display image sequences

@outofculture outofculture linked a pull request May 14, 2024 that will close this issue
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