/
bldit_project.csh
executable file
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/
bldit_project.csh
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#!/bin/csh -f
# ================= CMAQv5.4.X Extraction Script ==================== #
# Requirements: CMAQ git source code repository #
# #
# To report problems or request help with this script/program: #
# http://www.cmascenter.org/help_desk.cfm #
# =================================================================== #
#> This script may be executed when first downloading or cloning the CMAQ
#> repository. The routine will copy important scripts including config.cmaq,
#> bldit.cctm, and run.cctm as well as scripts for other utilities into
#> a $CMAQ_HOME project directory of the user's choice.
#>
#> Default location for CMAQ model build is one directory above
#> the repository. The user may also set their own preferred
#> directory.
set CMAQ_HOME = /home/username/path
#> This section allows users to choose explicitly which tools
#> to make available from the repo. For each selected tool,
#> extract_scripts.csh will copy any build and run scripts
#> out of the repo for you. Set each to [Y/N]
set EXT_CCTM = Y
#Utilities
set EXT_JPROC = Y
set EXT_MECH_BUILD = Y
# Pre-Processing Tools
set EXT_BCON = Y
set EXT_ICON = Y
set EXT_MCIP = Y
set EXT_CREATE_OMI = Y
# Post-Processing Tools
set EXT_COMBINE = Y
set EXT_CALC_TMETRIC = Y
set EXT_HR2DAY = Y
set EXT_SITECMP = Y
set EXT_SITECMP_DAILYO3 = Y
set EXT_WRITESITE = Y
#> model source code repository location
set REPO_HOME = $cwd
#> Check that the host system is Linux-based
set BLD_OS = `uname -s`
if ($BLD_OS != 'Linux') then
echo " $BLD_OS -> wrong bldit script for host!"
exit 1
endif
#> Check to make sure $CMAQ_HOME exists
if ( ! -e "$CMAQ_HOME" ) then
mkdir -pv $CMAQ_HOME
else
if ( ! -d "$CMAQ_HOME" ) then
echo " *** target exists, but not a directory ***"
exit 1
endif
endif
#> Return to repository top-level directory
cd $REPO_HOME
#> Check for EPA Specification. If the user entered "epa" in the
#> command line, then commands for sourcing files on the EPA high
#> performance computing system will be invoked, otherwise they will
#> be ignored.
set IS_EPA = 0
if ( $#argv == 1 ) then
if ( $1 == "EPA" | $1 == "epa" ) then
set IS_EPA = 1
endif
endif
#===============================================================================
#> Copy config_cmaq.csh to Project directory and insert correct location
#> of the repository these scripts are coming from.
#===============================================================================
cp config_cmaq.csh $CMAQ_HOME/config_cmaq.csh
sed -i '/setenv CMAQ_REPO \$CMAQ_HOME/c\ setenv CMAQ_REPO '"$REPO_HOME" $CMAQ_HOME/config_cmaq.csh
if ( $IS_EPA ) then
sed -i 's/\# source \/work\/MOD3DEV\/cmaq_common\/cmaq_env.csh/source \/work\/MOD3DEV\/cmaq_common\/cmaq_env.csh/' $CMAQ_HOME/config_cmaq.csh
endif
#===============================================================================
#> Copy CCTM scripts
#===============================================================================
if ( $EXT_CCTM == 'Y' ) then
if ( ! -e "$CMAQ_HOME/CCTM/scripts" ) then
mkdir -pv $CMAQ_HOME/CCTM/scripts
endif
cp CCTM/scripts/bldit_cctm.csh $CMAQ_HOME/CCTM/scripts/bldit_cctm.csh
cp CCTM/scripts/bldit_mech.csh $CMAQ_HOME/CCTM/scripts/bldit_mech.csh
cp CCTM/scripts/lonlat.csv $CMAQ_HOME/CCTM/scripts/lonlat.csv
cp CCTM/scripts/isam_control.2018_12NE3.txt $CMAQ_HOME/CCTM/scripts/isam_control.2018_12NE3.txt
cp CCTM/scripts/isam_control.2016_12SE1.txt $CMAQ_HOME/CCTM/scripts/isam_control.2016_12SE1.txt
cp CCTM/scripts/sensinput.2018_12NE3.dat $CMAQ_HOME/CCTM/scripts/sensinput.2018_12NE3.dat
cp CCTM/scripts/sensinput.2016_12SE1.dat $CMAQ_HOME/CCTM/scripts/sensinput.2016_12SE1.dat
cp CCTM/scripts/run_cctm_*.csh $CMAQ_HOME/CCTM/scripts/
endif
#===============================================================================
#> Copy JPROC scripts
#===============================================================================
if ( $EXT_JPROC == 'Y' ) then
if ( ! -e "$CMAQ_HOME/UTIL/jproc/scripts" ) then
mkdir -pv $CMAQ_HOME/UTIL/jproc/scripts
endif
cp UTIL/jproc/scripts/bldit_jproc.csh $CMAQ_HOME/UTIL/jproc/scripts/bldit_jproc.csh
cp UTIL/jproc/scripts/run_jproc.csh $CMAQ_HOME/UTIL/jproc/scripts/run_jproc.csh
endif
#===============================================================================
#> Copy CHEMMECH, INLINE_PHOT_PREPROC and CREATE_EBI scripts
#===============================================================================
if ( $EXT_MECH_BUILD == 'Y' ) then
if ( ! -e "$CMAQ_HOME/UTIL/chemmech/scripts" ) then
mkdir -pv $CMAQ_HOME/UTIL/chemmech/scripts
mkdir -pv $CMAQ_HOME/UTIL/chemmech/input
mkdir -pv $CMAQ_HOME/UTIL/chemmech/output
endif
cp UTIL/chemmech/scripts/bldit_chemmech.csh $CMAQ_HOME/UTIL/chemmech/scripts/bldit_chemmech.csh
cp UTIL/chemmech/scripts/run_chemmech.csh $CMAQ_HOME/UTIL/chemmech/scripts/run_chemmech.csh
if ( ! -e "$CMAQ_HOME/UTIL/inline_phot_preproc/scripts" ) then
mkdir -pv $CMAQ_HOME/UTIL/inline_phot_preproc/scripts
mkdir -pv $CMAQ_HOME/UTIL/inline_phot_preproc/input
mkdir -pv $CMAQ_HOME/UTIL/inline_phot_preproc/output
endif
cp UTIL/inline_phot_preproc/scripts/bldrun.inline_phot_preproc.csh $CMAQ_HOME/UTIL/inline_phot_preproc/scripts/bldrun.inline_phot_preproc.csh
if ( ! -e "$CMAQ_HOME/UTIL/create_ebi/scripts" ) then
mkdir -pv $CMAQ_HOME/UTIL/create_ebi/scripts
mkdir -pv $CMAQ_HOME/UTIL/create_ebi/input
mkdir -pv $CMAQ_HOME/UTIL/create_ebi/output
endif
cp UTIL/create_ebi/scripts/bldrun_create_ebi.csh $CMAQ_HOME/UTIL/create_ebi/scripts/bldrun_create_ebi.csh
endif
#===============================================================================
#> Copy BCON scripts
#===============================================================================
if ( $EXT_BCON == 'Y' ) then
if ( ! -e "$CMAQ_HOME/PREP/bcon/scripts" ) then
mkdir -pv $CMAQ_HOME/PREP/bcon/scripts
endif
cp PREP/bcon/scripts/bldit_bcon.csh $CMAQ_HOME/PREP/bcon/scripts/bldit_bcon.csh
cp PREP/bcon/scripts/run_bcon.csh $CMAQ_HOME/PREP/bcon/scripts/run_bcon.csh
endif
#===============================================================================
#> Copy ICON scripts
#===============================================================================
if ( $EXT_ICON == 'Y' ) then
if ( ! -e "$CMAQ_HOME/PREP/icon/scripts" ) then
mkdir -pv $CMAQ_HOME/PREP/icon/scripts
endif
cp PREP/icon/scripts/bldit_icon.csh $CMAQ_HOME/PREP/icon/scripts/bldit_icon.csh
cp PREP/icon/scripts/run_icon.csh $CMAQ_HOME/PREP/icon/scripts/run_icon.csh
endif
#===============================================================================
#> Copy MCIP scripts & src
#===============================================================================
if ( $EXT_MCIP == 'Y' ) then
if ( ! -e "$CMAQ_HOME/PREP/mcip/scripts" ) then
mkdir -pv $CMAQ_HOME/PREP/mcip/scripts
endif
cp PREP/mcip/scripts/run_mcip.csh $CMAQ_HOME/PREP/mcip/scripts/
if ( ! -e "$CMAQ_HOME/PREP/mcip/src" ) then
mkdir -pv $CMAQ_HOME/PREP/mcip/src
endif
cp PREP/mcip/src/* $CMAQ_HOME/PREP/mcip/src
endif
#===============================================================================
#> Copy create_omi scripts
#===============================================================================
if ( $EXT_CREATE_OMI == 'Y' ) then
if ( ! -e "$CMAQ_HOME/PREP/create_omi/scripts" ) then
mkdir -pv $CMAQ_HOME/PREP/create_omi/scripts
endif
cp PREP/create_omi/scripts/bldit_create_omi.csh $CMAQ_HOME/PREP/create_omi/scripts/bldit_create_omi.csh
cp PREP/create_omi/scripts/get_toms_data.q $CMAQ_HOME/PREP/create_omi/scripts/get_toms_data.q
cp PREP/create_omi/scripts/run_create_omi.csh $CMAQ_HOME/PREP/create_omi/scripts/run_create_omi.csh
endif
#===============================================================================
#> Copy Combine Post-Processor scripts
#===============================================================================
if ( $EXT_COMBINE == 'Y' ) then
if ( ! -e "$CMAQ_HOME/POST/combine/scripts" ) then
mkdir -pv $CMAQ_HOME/POST/combine/scripts
endif
cp POST/combine/scripts/bldit_combine.csh $CMAQ_HOME/POST/combine/scripts/bldit_combine.csh
cp POST/combine/scripts/run_combine.csh $CMAQ_HOME/POST/combine/scripts/run_combine.csh
mkdir $CMAQ_HOME/POST/combine/scripts/spec_def_files
cp -L POST/combine/scripts/spec_def_files/SpecDef* $CMAQ_HOME/POST/combine/scripts/spec_def_files
endif
#===============================================================================
#> Copy calc_tmetric Post-Processor scripts
#===============================================================================
if ( $EXT_CALC_TMETRIC == 'Y' ) then
if ( ! -e "$CMAQ_HOME/POST/calc_tmetric/scripts" ) then
mkdir -pv $CMAQ_HOME/POST/calc_tmetric/scripts
endif
cp POST/calc_tmetric/scripts/bldit_calc_tmetric.csh $CMAQ_HOME/POST/calc_tmetric/scripts/bldit_calc_tmetric.csh
cp POST/calc_tmetric/scripts/run_calc_tmetric.csh $CMAQ_HOME/POST/calc_tmetric/scripts/run_calc_tmetric.csh
endif
#===============================================================================
#> Copy hr2day Post-Processor scripts
#===============================================================================
if ( $EXT_HR2DAY == 'Y' ) then
if ( ! -e "$CMAQ_HOME/POST/hr2day/scripts" ) then
mkdir -pv $CMAQ_HOME/POST/hr2day/scripts
endif
cp POST/hr2day/scripts/bldit_hr2day.csh $CMAQ_HOME/POST/hr2day/scripts/bldit_hr2day.csh
cp POST/hr2day/scripts/run_hr2day.csh $CMAQ_HOME/POST/hr2day/scripts/run_hr2day.csh
endif
#===============================================================================
#> Copy sitecmp Post-Processor scripts
#===============================================================================
if ( $EXT_SITECMP == 'Y' ) then
if ( ! -e "$CMAQ_HOME/POST/sitecmp/scripts" ) then
mkdir -pv $CMAQ_HOME/POST/sitecmp/scripts
endif
cp POST/sitecmp/scripts/bldit_sitecmp.csh $CMAQ_HOME/POST/sitecmp/scripts/
cp POST/sitecmp/scripts/run_sitecmp_AQS_Hourly.csh $CMAQ_HOME/POST/sitecmp/scripts/
endif
#===============================================================================
#> Copy sitecmp_dailyo3 Post-Processor scripts
#===============================================================================
if ( $EXT_SITECMP_DAILYO3 == 'Y' ) then
if ( ! -e "$CMAQ_HOME/POST/sitecmp_dailyo3/scripts" ) then
mkdir -pv $CMAQ_HOME/POST/sitecmp_dailyo3/scripts
endif
cp POST/sitecmp_dailyo3/scripts/bldit_sitecmp_dailyo3.csh $CMAQ_HOME/POST/sitecmp_dailyo3/scripts/
cp POST/sitecmp_dailyo3/scripts/run_sitecmp_dailyo3_AQS.csh $CMAQ_HOME/POST/sitecmp_dailyo3/scripts/
cp POST/sitecmp_dailyo3/scripts/run_sitecmp_dailyo3_CASTNET.csh $CMAQ_HOME/POST/sitecmp_dailyo3/scripts/
endif
#===============================================================================
#> Copy writesite Post-Processor scripts
#===============================================================================
if ( $EXT_WRITESITE == 'Y' ) then
if ( ! -e "$CMAQ_HOME/POST/writesite/scripts" ) then
mkdir -pv $CMAQ_HOME/POST/writesite/scripts
endif
cp POST/writesite/scripts/bldit_writesite.csh $CMAQ_HOME/POST/writesite/scripts/bldit_writesite.csh
cp POST/writesite/scripts/run_writesite.csh $CMAQ_HOME/POST/writesite/scripts/run_writesite.csh
endif
#===============================================================================
# Insert Job Scheduler Preface into Run Scripts for those working inside EPA
if ( $IS_EPA ) then
source /work/MOD3DEV/cmaq_common/epa_scheduler.csh #>>> Comment Out if not at EPA
endif
#===============================================================================
#> Exit the Script
#===============================================================================
echo "Configuration and Run Scripts have been Extracted and placed in: $CMAQ_HOME"
echo "You may now edit these scripts to conform to your system and run options."
exit