Fixed bug with refreshing after model extraction from a workflow.
Fixed bug with destination for models extracted from workflows.

… from the model editor and the workflow selection pages.

Removed the experiments form the query string for workflows.
Added breadcrumb links to the workflow manager that is displayed only when the model is in a project.
Added function to update the workflow breadcrumb if the workflow name is changed.
Closes #965

…when to call that function.

Removed the function that updates workflow path when a new experiment is chosen and the event that triggers it.
Removed the function that updates the url params 'experiments' and 'parentPath'.
Closes #964

…ble when the workflow is running.

Refactored the workflow manager page to only render the workflow editor if the status is new or ready.
Refactored the workflow manager page to render the model viewer and workflow status containers only when the status is not new or ready.
Refactored the workflow manager page to only render the workflow info and workflow results containers if the status is error or complete.
Changed the header of the Model Veiwer container to 'Preview Model: <<model_name>>'.
Closes #963

…project if the status is ready.

Closes #966

Added function that disables the save plot button after saving the plot.
Added function to disable the save plot button if the plot was saved in a previous session.
Closes #980

…chss/stochss into project-manager-pre-release

Changed the name of the default workflow group to 'WorkflowGroup1'.
Removed the 'Workflows' header.
Closes #962

Disabled annotations for notebook workflows.
Refactored the handleOpenWorkflowClick function to be able to open both StochSS and Notebook workflows.
Added a parent path to the notebook the new notebook workflow request to allow the notebook to be stored in the selected workflow group.
Refactored the workflow notebook api handler to use the parent path of the request for new notebook workflows as the dest_path and to use the dirname of the workflow path for workflows being converted into notebooks as the dest_path.
Closes #968

…#971

…fore they can create a new workflow.

Fixed bug that was preventing notebook workflows from being moved to the trash.
Added keyword argument 'dest_path' to the sciope model inference and model exploration conversion scripts to allow the notebooks to be saved to a workflow group.
Added checks to the drag and drop that prevents files from being dragged from trash back into trash.
Modified the checks for the drag and drop to allow the user to move notebook workflows to a workflow group
.

… that write files to the users file system outside of the project.

Added type to the response dict of the load-project api request.
Added type to the workflow listings on the project manager page.
Closes #973

Added callback function to the addNewWorkflowGroup function that will be executed instead of the update function if it exists.
Refactored the 'Create workflow with model' button to be a drop down button with options for each workflow group.
Added function to handles cases of no workflow groups found that call the newWorkflowGroup function of the project manager to prompt the user to name the workflow group before navigating to the workflow selection page.
Added a button for creating the workflow groups.
Closes #988

Closes #990

Added the StochSS workflow button, the ensemble simulation notebook button, and the sciope model inference notebook button to the list of disabled button in the validate workflow function.
Closes #991

… attribute.

Removed the href from the breadcrumb and added the 'active-link' class.
Added event listener and function to save a model and then navigate to the project when the breadcrumb link is clicked.
Removed the extension from the breadcrumb link in the workflow selection page.

Refactored the return to project click function to save a workflow with status of new and ready.
Added the workflow group to the breadcrumb links on the workflow selection page.
Closes #993

Added the page flag to the check that saves the workflow before returning to the project that prevents to workflow from being saved if the model wasn't loaded.
Added function to disable the workflow state buttons if the model was not loaded.

… files to window.open (fixes hanging file browser page and iframe error).

…disables workflow options that wont run with the model.

…listing section if there are changes to the workflow group listing section.

…e visible trace groups and records a list of currently visible species.

Added the list of currently visible species to the data set in the save plot request.
Added checks to determine if the new plot has already been saved when the visible species changes in the plot.
Added function to the plot results script to turn off trace groups for species that are not in the list of species sent in the request if they are sent.
Added key to the plots config that makes the plot static in the project manager.
Disabled default plotly legend event listeners.
Closes #981