/
example_data.json
231 lines (231 loc) · 10.1 KB
/
example_data.json
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{
"Name-Mappings": {
"3D-Cylinder.proj": "3D-Cylinder",
"3D_Cylinder": "3D-Cylinder",
"Brusselator": "Brusselator",
"Brusselator.proj": "Brusselator",
"Degradation": "Degradation",
"Degradation.proj": "Degradation",
"Dimerization": "Dimerization",
"Dimerization.proj": "Dimerization",
"Example SIR Epidemic Project.proj": "SIR-Epidemic",
"SIR-Epidemic.proj": "SIR-Epidemic",
"Gene-Regulatory-Network.proj": "Gene-Regulatory-Network",
"Gene_Regulatory_Network": "Gene-Regulatory-Network",
"Genetic-Toggle-Switch.proj": "Genetic-Toggle-Switch",
"Lotkavolterra-Oscillator.proj": "Lotka-Volterra Oscillator",
"Lotkavolterra_Oscillator": "Lotka-Volterra Oscillator",
"Michaelis-Menten.proj": "Michaelis-Menten",
"Michaelis_Menten": "Michaelis-Menten",
"Opioid": "Opioid",
"Opioid.proj": "Opioid",
"Oregonator": "Oregonator",
"Oregonator.proj": "Oregonator",
"Polarization_In_Yeast": "Yeast-Polarization",
"Schlogl": "Schlogl",
"Schlogl.proj": "Schlogl",
"Spatial-Birth-Death.proj": "Spatial-Birth-Death",
"Toggle_Switch": "Genetic-Toggle-Switch",
"Tyson-Oscillator.proj": "Tyson-Oscillator",
"Tyson_Oscillator": "Tyson-Oscillator",
"Vilar-Oscillator.proj": "Vilar-Oscillator",
"Vilar_Oscillator": "Vilar-Oscillator",
"Yeast-Polarization.proj": "Yeast-Polarization"
},
"Names": [
"Brusselator.proj",
"Degradation.proj",
"Dimerization.proj",
"SIR-Epidemic.proj",
"Genetic-Toggle-Switch.proj",
"Lotkavolterra-Oscillator.proj",
"Michaelis-Menten.proj",
"Opioid.proj",
"Oregonator.proj",
"Schlogl.proj",
"Tyson-Oscillator.proj",
"Vilar-Oscillator.proj",
"3D-Cylinder.proj",
"Gene-Regulatory-Network.proj",
"Spatial-Birth-Death.proj",
"Yeast-Polarization.proj",
"Brusselator",
"Degradation",
"Dimerization",
"Lotkavolterra_Oscillator",
"Michaelis_Menten",
"Opioid",
"Oregonator",
"Schlogl",
"Toggle_Switch",
"Tyson_Oscillator",
"Vilar_Oscillator",
"3D_Cylinder",
"Gene_Regulatory_Network",
"Polarization_In_Yeast"
],
"Spatial": [
{
"alert": "success",
"description": "Spatial model used for instruction and validation. Domain is a cylinder, species 'A' is created on end, 'B' on the other, both diffuse through the volume and mutually annihilate on contact. Shows how to build a reaction-diffusion model in a 3D domain.",
"error": null,
"md5_sum": "b1e074a296984cbe32f2b479e11dcc68",
"mod_time": "Feb 15, 2023",
"name": "3D-Cylinder",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/3D-Cylinder.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "Transcription and translation. Model include a Gene in the 'on' or 'off' state, mRNA, and protein 'P'. mRNA is transcribed in the nucleus, diffuses to the cytoplasm, where it translates protein P, which diffuses to the nucleus and represses the gene (switches to the 'off' state.",
"error": "6bb84a07d67d08fd040447c4682c28a3",
"md5_sum": "0ae22f074d3f59299783de356dac8a64",
"mod_time": "Feb 15, 2023",
"name": "Gene-Regulatory-Network",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Gene-Regulatory-Network.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "Birth-Death model on a 2D domain.",
"error": null,
"md5_sum": "7825714af50bf1dedc39680a25c45d0a",
"mod_time": "Feb 13, 2023",
"name": "Spatial-Birth-Death",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Spatial-Birth-Death.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "Model of cooperative recruitment of a protein from the cytoplasm to the membrane.",
"error": "e59d2d5b073308a3f900a239ab381372",
"md5_sum": "cf040cd00b06738340ce4a8b1fd93f77",
"mod_time": "Feb 15, 2023",
"name": "Yeast-Polarization",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Yeast-Polarization.zip",
"umd5_sum": null
}
],
"Well-Mixed": [
{
"alert": "success",
"description": "A theoretical model for a type of autocatalytic reaction",
"error": null,
"md5_sum": "3cdfebfdf9e773785b55f842e9743786",
"mod_time": "Aug 30, 2022",
"name": "Brusselator",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Brusselator.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "Simple model of protein degradation.",
"error": "eaab394b5fb00d8e4abc555e7bba9d71",
"md5_sum": "cc4886c0b779ed61313f9ee360914635",
"mod_time": "Aug 30, 2022",
"name": "Degradation",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Degradation.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "Simple model of protein dimerization",
"error": "f797ac846c69859d739c6ea3590474c7",
"md5_sum": "b6f521eea718865dc7c1a4859660690c",
"mod_time": "Aug 30, 2022",
"name": "Dimerization",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Dimerization.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "Model of a gene regulatory network with two proteins, each which represses the transcription of the other.",
"error": "23769fc852218a0d67fd93842cbbf409",
"md5_sum": "df0a13f5e6e46f5d178c45aa84bf3156",
"mod_time": "Aug 30, 2022",
"name": "Genetic-Toggle-Switch",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Genetic-Toggle-Switch.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "An ecological model of Rabbits and Wolves.",
"error": "dc50252e62110b7a09d4e194947b21e2",
"md5_sum": "276a033a4f8f435628072b2ea4118fa0",
"mod_time": "Aug 30, 2022",
"name": "Lotka-Volterra Oscillator",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Lotkavolterra-Oscillator.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "Model showing an example of Michaelis–Menten kinetics enzyme kinetics.",
"error": "1c5acd9e4081369ec7d5db716a59da00",
"md5_sum": "9c070b446a3a25fdf385d4ceaa7d12d2",
"mod_time": "Aug 30, 2022",
"name": "Michaelis-Menten",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Michaelis-Menten.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "A epidemiological model of an opioid epidemic in a human population.",
"error": "fb6bdb2c15604ffab7a83ffcd5cd9a5c",
"md5_sum": "7307cd39c446dd2716b89b646b3c03a9",
"mod_time": "Aug 30, 2022",
"name": "Opioid",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Opioid.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "A theoretical model for a type of autocatalytic reaction.",
"error": "1c48ca4abc6ac80b5cde76bb8307cdb8",
"md5_sum": "3e5407f3f4a75d3bf95297dd20a26d5b",
"mod_time": "Aug 30, 2022",
"name": "Oregonator",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Oregonator.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "An epidemiological model using the standard SIR formulation.",
"error": null,
"md5_sum": "0f3e814db35ca249e7e68a58f0c3b5d3",
"mod_time": "Feb 20, 2023",
"name": "SIR-Epidemic",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/SIR-Epidemic.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "A model of a chemical reaction system that exhibits bi-stability.",
"error": "dddfc3241c32d18081e482ebc5a7e153",
"md5_sum": "e7b5b4d251bb9f6d12000311776848bf",
"mod_time": "Aug 30, 2022",
"name": "Schlogl",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Schlogl.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "A simple model of circadian rhythms based on dimerization and proteolysis.",
"error": "d47c4be3abe51d792741c0abee7c17e2",
"md5_sum": "ef593bf31cffbee14144e5c181b76b30",
"mod_time": "Aug 30, 2022",
"name": "Tyson-Oscillator",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Tyson-Oscillator.zip",
"umd5_sum": null
},
{
"alert": "success",
"description": "A model demonstrating mechanisms of noise-resistance in genetic oscillators.",
"error": "b4a0a70468caeb54604791e22f91e223",
"md5_sum": "c697412254c72c6c5f9acc7a8e46bf78",
"mod_time": "Aug 30, 2022",
"name": "Vilar-Oscillator",
"open_link": "https://github.com/StochSS/StochSS_Example_Library/raw/main/Vilar-Oscillator.zip",
"umd5_sum": null
}
]
}