0.2.0

skani container

Main tool : skani

Full documentation: https://github.com/bluenote-1577/skani/wiki

skani is a program for calculating average nucleotide identity (ANI) from DNA sequences (contigs/MAGs/genomes) for ANI > ~80%.

Example Usage

Quick ANI calculation:

skani dist genome1.fa genome2.fa

Memory-efficient database search:

skani sketch genomes/* -o database
skani search -d database query1.fa query2.fa ...

All-to-all comparison:

skani triangle genomes/*