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SeqKit container

Main tool : SeqKit

SeqKit is a cross-platform and ultrafast toolkit for FASTA/Q file manipulation.

Citation:

W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962.

Example Usage

# get simple statistics from FASTA/Q files

seqkit stats <file name(s)>

# or with flags

seqkit stats --all --tabular <file name(s)>

# conversion from FASTA to FASTQ

seqkit fa2fq <file name(s)>