Main tool : racon
Code repository: https://github.com/lbcb-sci/racon
Basic information on how to use this tool:
- executable: racon
- help: -h
- version: -v
- description: Polishes long read assemblies
Racon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step.
# general
racon <sequences> <overlaps> <target sequences>
# more specific
racon --match 8 --mismatch -6 --gap -8 --window-length 500 --threads {threads} {input.reads} {input.alignment} {input.assembly}