Main tool : table2asn
Full documentation: README
table2asn is a command-line program that creates sequence records for submission to GenBank
# Single non-genome submission: a particular .fsa file, and only 1 sequence in the .fsa file and the source information is in the definition line of the .fsa file:
table2asn -t template.sbt -i x.fsa -V v
# Batch non-genome submission: a directory that contains .fsa files, and multiple sequences per file, and the source information is in the definition line of the .fsa files:
table2asn -t template.sbt -indir path_to_files -a s -V v
# Genome submission: a directory that contains multiple .fsa files of a single genome, and one or more sequences per file and the source information is in the definition line of the .fsa files:
table2asn -t template.sbt -indir path_to_files -M n -Z
# Genome submission for the most common gapped situation (= runs of 10 or more Ns represent a gap, and there are no gaps of completely unknown size, and the evidence for linkage across the gaps is "paired-ends"), and the source information is in the definition line of the .fsa files:
table2asn -t template -indir path_to_files -M n -Z -gaps-min 10 -l paired-ends