5.6.1-prok-bacteria_odb10_2024-01-08

Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO) container

Main tool : BUSCO

Additional tools:

• BBTools 39.01
• HMMER 3.3
• Prodigal 2.6.3
• SEPP 4.5.1
• Python 3.8.10
• BioPython 1.83
• Perl 5.30.0
• OpenJDK 1.8.0_392

Full documentation: https://busco.ezlab.org/busco_userguide.html

This is a BUSCO docker image which has basic functions for prokaryotes only. This image contains bacteria_odb10 lineage dataset for offline use.

Example Usage

# offline usage with bacteria lineage
busco --offline -i assembly.fasta -l /busco_downloads/lineages/bacteria_odb10 -o output -m genome
# auto lineage selection
busco -i assembly.fasta -o output -m genome --auto-lineage-prok