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NEWS.md

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prewas 1.0.0

  • Added a NEWS.md file to track changes to the package.
  • Initial CRAN submission

prewas 1.1.0

  • Given updates to as.factor default behavior in R 4.0 code was changed to keep data correctly typed.
  • New feature: prewas can now subset variants by SnpEff annotation.
  • New feature: Added an optional flag, grp_nonref. Its value tells prewas whether keep all alleles at multiallelic sites separate or to collapse all non-reference alleles for multi-allelic sites.
  • New feature: prewas can now handle bcftools-prepared indel vcf file and prepare these variants in the same manner as SNPs.

prewas 1.1.1

  • Prewas was archived from CRAN because a dependency was archived from CRAN. The dependent package is now updated and therefore prewas can be on CRAN again.