{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":332545,"defaultBranch":"main","name":"RMG-Py","ownerLogin":"ReactionMechanismGenerator","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2009-10-09T21:16:17.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/12617462?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1713885585.0","currentOid":""},"activityList":{"items":[{"before":"a027e42d834ab3b1be7ecb351844902ae22e02cb","after":"042c944389dd754bedfd50028dd215a0ad079f61","ref":"refs/heads/main","pushedAt":"2024-04-23T15:19:45.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2653 from ReactionMechanismGenerator/fix_seed_mech_initial_species_core_edge\n\nFIx Handling of Initial Species with Seed Mechanisms","shortMessageHtmlLink":"Merge pull request #2653 from ReactionMechanismGenerator/fix_seed_mec…"}},{"before":"42e1ddcebfda07481d24ae97ed894cff70c98713","after":null,"ref":"refs/heads/fix_seed_mech_initial_species_core_edge","pushedAt":"2024-04-23T15:19:45.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"}},{"before":null,"after":"42e1ddcebfda07481d24ae97ed894cff70c98713","ref":"refs/heads/fix_seed_mech_initial_species_core_edge","pushedAt":"2024-04-20T22:25:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mjohnson541","name":"Matt Johnson","path":"/mjohnson541","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7773228?s=80&v=4"},"commit":{"message":"allow running enlarge on species that are already in core\n\nthis is exclusively for initial species that may be added to core during seed mech addition","shortMessageHtmlLink":"allow running enlarge on species that are already in core"}},{"before":"50df700f1ae12cc489ca7cde091630071486f5a6","after":"a027e42d834ab3b1be7ecb351844902ae22e02cb","ref":"refs/heads/main","pushedAt":"2024-04-18T17:32:17.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2647 from donerancl/resonance_structure_bug\n\nUpdate resonance structure generation function to skip CuttingLabel correctly","shortMessageHtmlLink":"Merge pull request #2647 from donerancl/resonance_structure_bug"}},{"before":"751994498672924828aebc77301efc8bdfd80ace","after":"50df700f1ae12cc489ca7cde091630071486f5a6","ref":"refs/heads/main","pushedAt":"2024-04-17T15:41:57.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"sevyharris","name":"Sevy Harris","path":"/sevyharris","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30695172?s=80&v=4"},"commit":{"message":"Merge pull request #2651 from Julian-Ufert/main\n\nresolved issue #2266","shortMessageHtmlLink":"Merge pull request #2651 from Julian-Ufert/main"}},{"before":"c5d557f336d1a6f42ce5681b2d9373838ce5aa41","after":"0c5630b49d049f2b6df5b4b411e974829a5457da","ref":"refs/heads/echem-rebase","pushedAt":"2024-04-17T03:02:45.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"ssun30","name":"Su Sun","path":"/ssun30","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56568705?s=80&v=4"},"commit":{"message":"Add set_reference_potential for SurfaceChargeTransfer\nin to_rms","shortMessageHtmlLink":"Add set_reference_potential for SurfaceChargeTransfer"}},{"before":"a968a10b1fd17a1822a0d759e70cb9273a34ca78","after":"c33171f0ef5fd87cdbc369d26838b3f482067e09","ref":"refs/heads/gh-pages","pushedAt":"2024-04-15T01:10:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Automated documentation rebuild","shortMessageHtmlLink":"Automated documentation rebuild"}},{"before":"6ed6b7e05825d0fa137520fd3ef1c1354a07e4ff","after":"751994498672924828aebc77301efc8bdfd80ace","ref":"refs/heads/main","pushedAt":"2024-04-15T00:36:56.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2601 from donerancl/main\n\nAdd documentation about `speciesCuttingThreshold`","shortMessageHtmlLink":"Merge pull request #2601 from donerancl/main"}},{"before":"75ee20f290e0362d89f6356f32994bcaabebf7e9","after":"c5d557f336d1a6f42ce5681b2d9373838ce5aa41","ref":"refs/heads/echem-rebase","pushedAt":"2024-04-12T18:42:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ssun30","name":"Su Sun","path":"/ssun30","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56568705?s=80&v=4"},"commit":{"message":"Add set_reference_potential for SurfaceChargeTransfer\nin to_rms","shortMessageHtmlLink":"Add set_reference_potential for SurfaceChargeTransfer"}},{"before":"0a02c322927f043c62ef1a2f6830580941c7344f","after":"a968a10b1fd17a1822a0d759e70cb9273a34ca78","ref":"refs/heads/gh-pages","pushedAt":"2024-04-09T22:54:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Automated documentation rebuild","shortMessageHtmlLink":"Automated documentation rebuild"}},{"before":"e77d985c5a583e3b5e62a85c18ae4c3b3208ed3a","after":null,"ref":"refs/heads/fix_generate_reactions","pushedAt":"2024-04-09T22:08:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"}},{"before":"a458b1deb3c26f69cff627396e3a635538c1cff6","after":"6ed6b7e05825d0fa137520fd3ef1c1354a07e4ff","ref":"refs/heads/main","pushedAt":"2024-04-09T22:08:51.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2632 from ReactionMechanismGenerator/fix_generate_reactions\n\nClean up some code for calculating degeneracy in kinetics codebase","shortMessageHtmlLink":"Merge pull request #2632 from ReactionMechanismGenerator/fix_generate…"}},{"before":"09f7354e293dc59e8c8a9bdb1ad2eb81e8ed6de7","after":"e77d985c5a583e3b5e62a85c18ae4c3b3208ed3a","ref":"refs/heads/fix_generate_reactions","pushedAt":"2024-04-04T16:59:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jonwzheng","name":"Jonathan Zheng","path":"/jonwzheng","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30244073?s=80&v=4"},"commit":{"message":"raise error when checking for same reactants if provided more than 3 reactants","shortMessageHtmlLink":"raise error when checking for same reactants if provided more than 3 …"}},{"before":"339a7ed6f09e931716e8ecf7dd25ee518de84db1","after":"09f7354e293dc59e8c8a9bdb1ad2eb81e8ed6de7","ref":"refs/heads/fix_generate_reactions","pushedAt":"2024-04-04T14:54:15.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"add resonance flag to find_degenerate_reactions for generate_reactions_from_families as well","shortMessageHtmlLink":"add resonance flag to find_degenerate_reactions for generate_reaction…"}},{"before":"996780b81098ee14dbb40f055855bf3f5f71f34f","after":"68dc92271f32b49409512fd2954c3595cea9001c","ref":"refs/heads/yaml_writer_addition","pushedAt":"2024-04-01T19:50:14.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Revert \"Redefine gas inside reactionTest. (needed?)\"\n\nThe reactionTest.py is failing. From the failure I can't see why\nthis would be the cause, but in the idea of change-one-thing-at-a-time\nI'm reverting the most recent change since I think the tests USED to pass.\n\nThis reverts commit a8eaa3babc0a0c14aff6a98678caa746e8c2f4c4.","shortMessageHtmlLink":"Revert \"Redefine gas inside reactionTest. (needed?)\""}},{"before":"564592394c0c8b5ee096feec11f9b498bd659109","after":"75ee20f290e0362d89f6356f32994bcaabebf7e9","ref":"refs/heads/echem-rebase","pushedAt":"2024-04-01T19:40:02.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Fixed syntax problems with SEI examples","shortMessageHtmlLink":"Fixed syntax problems with SEI examples"}},{"before":"7518dbb7eae67072827febaff314f5693dbdfa32","after":"0a02c322927f043c62ef1a2f6830580941c7344f","ref":"refs/heads/gh-pages","pushedAt":"2024-04-01T19:26:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Automated documentation rebuild","shortMessageHtmlLink":"Automated documentation rebuild"}},{"before":"3bc296409953478f68df0b51653121824587a333","after":"a458b1deb3c26f69cff627396e3a635538c1cff6","ref":"refs/heads/main","pushedAt":"2024-04-01T18:40:37.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2644 from rwest/remove_test_data\n\nRemove duplicated test data directory","shortMessageHtmlLink":"Merge pull request #2644 from rwest/remove_test_data"}},{"before":"eed950a389738e70894c25e1d8388bb20ef75947","after":"3bc296409953478f68df0b51653121824587a333","ref":"refs/heads/main","pushedAt":"2024-04-01T16:02:38.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"Merge pull request #2643 from sevyharris/readchemkin_robust_transthermo\n\nMake chemkin read of transport and thermo files more robust","shortMessageHtmlLink":"Merge pull request #2643 from sevyharris/readchemkin_robust_transthermo"}},{"before":"0acb668d005acda090c64305bf360329857d4033","after":"564592394c0c8b5ee096feec11f9b498bd659109","ref":"refs/heads/echem-rebase","pushedAt":"2024-03-29T16:33:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ssun30","name":"Su Sun","path":"/ssun30","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56568705?s=80&v=4"},"commit":{"message":"Added increment_charge and decrement_charge to Rx\nand Rx!H atom types","shortMessageHtmlLink":"Added increment_charge and decrement_charge to Rx"}},{"before":"7039818c4d087de4d44a44a8389fe36346382162","after":"0acb668d005acda090c64305bf360329857d4033","ref":"refs/heads/echem-rebase","pushedAt":"2024-03-29T15:44:50.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"ssun30","name":"Su Sun","path":"/ssun30","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56568705?s=80&v=4"},"commit":{"message":"Fixed syntax problems with SEI examples","shortMessageHtmlLink":"Fixed syntax problems with SEI examples"}},{"before":"a24594fdf63b88955906f640b013fecd2972364c","after":"339a7ed6f09e931716e8ecf7dd25ee518de84db1","ref":"refs/heads/fix_generate_reactions","pushedAt":"2024-03-29T15:08:08.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"jonwzheng","name":"Jonathan Zheng","path":"/jonwzheng","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30244073?s=80&v=4"},"commit":{"message":"add resonance flag to find_degenerate_reactions for generate_reactions_from_families as well","shortMessageHtmlLink":"add resonance flag to find_degenerate_reactions for generate_reaction…"}},{"before":"dc3befbcb58416bef24dbb70932321d9bd00b82e","after":"996780b81098ee14dbb40f055855bf3f5f71f34f","ref":"refs/heads/yaml_writer_addition","pushedAt":"2024-03-23T13:38:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Revert \"Redefine gas inside reactionTest. (needed?)\"\n\nThe reactionTest.py is failing. From the failure I can't see why\nthis would be the cause, but in the idea of change-one-thing-at-a-time\nI'm reverting the most recent change since I think the tests USED to pass.\n\nThis reverts commit a8eaa3babc0a0c14aff6a98678caa746e8c2f4c4.","shortMessageHtmlLink":"Revert \"Redefine gas inside reactionTest. (needed?)\""}},{"before":"8ff761b58476b5b85f5fed78f968f4039f2da0da","after":"dc3befbcb58416bef24dbb70932321d9bd00b82e","ref":"refs/heads/yaml_writer_addition","pushedAt":"2024-03-23T04:19:57.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Tidy up reaction.py, removing fix_reaction\n\nThis function is only used in one place for one very specific thing\nso I inlined it. It also had a vague name.\n\nI then commented it out, because I'm not clear why it's needed.\nIf it is needed, we can restore it (and put a comment as to why)","shortMessageHtmlLink":"Tidy up reaction.py, removing fix_reaction"}},{"before":"5b88b4aa827822f163b882eda5892e9b0924ddb9","after":null,"ref":"refs/heads/fix/conda_recipe_pure_python","pushedAt":"2024-03-22T19:41:28.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"}},{"before":null,"after":"5b88b4aa827822f163b882eda5892e9b0924ddb9","ref":"refs/heads/fix/conda_recipe_pure_python","pushedAt":"2024-03-22T19:41:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"JacksonBurns","name":"Jackson Burns","path":"/JacksonBurns","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33505528?s=80&v=4"},"commit":{"message":"revise conda recipe and associated CI","shortMessageHtmlLink":"revise conda recipe and associated CI"}},{"before":"d23236a49939628888f4b9b2a2034b4daaf4b3c5","after":"8ff761b58476b5b85f5fed78f968f4039f2da0da","ref":"refs/heads/yaml_writer_addition","pushedAt":"2024-03-22T15:00:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Trying to fix yaml (via cantera 2.6) for Lindemann kinetics\n\nThe call rmgpy/reaction.py:339: in rmgpy.reaction.Reaction.to_cantera\n rate = ct.TroeRate(\nwas causing\n TypeError: Argument 'rate' has incorrect type (expected cantera._cantera.Arrhenius, got cantera._cantera.ArrheniusRate)\n\nI think the ct.LindemannRate expects an Arrhenius not an ArrheniusRate.\nThdis was with cantera 2.6.0 py37hb93dfd8_0 cantera\nrunning on the Ubuntu CI","shortMessageHtmlLink":"Trying to fix yaml (via cantera 2.6) for Lindemann kinetics"}},{"before":"7d250f380050b97f7189d07aa189ad84f484ec08","after":"d23236a49939628888f4b9b2a2034b4daaf4b3c5","ref":"refs/heads/yaml_writer_addition","pushedAt":"2024-03-22T13:39:34.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Tidying the cantera yaml writer\n\nRenamed some functions and (i think) simplified some loops","shortMessageHtmlLink":"Tidying the cantera yaml writer"}},{"before":"7a7fbf8142b5985c94f591bc79af67fb4abc5f20","after":"7d250f380050b97f7189d07aa189ad84f484ec08","ref":"refs/heads/yaml_writer_addition","pushedAt":"2024-03-22T12:55:33.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Trying to fix yaml (via cantera 2.6) for Lindemann kinetics\n\nThe call\n rate = ct.LindemannRate(low_rate, high_rate, falloff)\nwas causing \n TypeError: Argument 'rate' has incorrect type (expected cantera._cantera.Arrhenius, got cantera._cantera.ArrheniusRate)\n\nI think the ct.LindemannRate expects an Arrhenius not an ArrheniusRate.\nThdis was with cantera 2.6.0 py37hb93dfd8_0 cantera\nrunning on the Ubuntu CI","shortMessageHtmlLink":"Trying to fix yaml (via cantera 2.6) for Lindemann kinetics"}},{"before":"4193a20c8bace7dc2c0718e35852ee0e7c546017","after":"7a7fbf8142b5985c94f591bc79af67fb4abc5f20","ref":"refs/heads/yaml_writer_addition","pushedAt":"2024-03-21T17:45:20.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"rwest","name":"Richard West","path":"/rwest","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/93807?s=80&v=4"},"commit":{"message":"Made a dummy function stub species_to_yaml_string","shortMessageHtmlLink":"Made a dummy function stub species_to_yaml_string"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEODnrSwA","startCursor":null,"endCursor":null}},"title":"Activity · ReactionMechanismGenerator/RMG-Py"}