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ERROR: compilation failed for package ‘flowCore’ #264

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Biomiha opened this issue Jan 15, 2024 · 0 comments
Open

ERROR: compilation failed for package ‘flowCore’ #264

Biomiha opened this issue Jan 15, 2024 · 0 comments

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@Biomiha
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Biomiha commented Jan 15, 2024

Hi there,

I am trying to get all my cytoverse packages up to the latest version, however I keep hitting against compilation issues.
I am running an Apple M1 Pro and Sonoma 14.2.1.
I tried to compile flowCore and got the following error during compilation:

1 error generated.
make: *** [fcsTextParse.o] Error 1
ERROR: compilation failed for package ‘flowCore’

Before this there was also a line saying:

on.hpp:38:27: fatal error: no template named 'binary_function' in namespace 'std'; did you mean '__binary_function'?

The latter was to do with the {cytolib} package.

There don't seem to be any available binaries for the M1 (arm64) architecture for the current version and there is no way of finding old binaries (e.g. Bioconductor version 3.17) so I am a bit stuck.
I imagine there are quite a few people running M1 and M2 chips these days that will be stuck in a similar limbo to me. Any ideas for where to find a binary?

Thanks ever so much in advance,
Miha

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