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DESCRIPTION
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DESCRIPTION
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Package: PRIST
Type: Package
Title: Probabilistic Inference for Single Cell Transcriptomics
Version: 0.925
Date: 2015-03-11
Author: Andrew McDavid <amcdavid@fredhutch.org>, Greg Finak <gfinak@fredhutch.org>, Masanao Yajima <myajima@fredhutch.org>
Maintainer: Greg Finak <gfinak@fredhutch.org>
VignetteBuilder: knitr
Imports:
Biobase,
data.table,
BiocGenerics,
gdata,
lattice,
ggplot2,
latticeExtra,
plyr,
stringr,
abind,
methods,
arm (<= 1.7.7),
parallel
Suggests:
flowClust(>= 2.99),
knitr,
testthat,
lme4(>= 1.0),
roxygen2(> 4.0.0),
numDeriv,
car
Depends:
reshape
Description: Core data structures and methods for handling single cell assay
data.
License: Artistic-2.0
Collate:
'AllGenerics.R'
'AllClasses.R'
'DataLayer.R'
'Fluidigm-methods.R'
'GSEA-by-boot.R'
'Hypothesis.R'
'LmWrapper.R'
'MultidimensionalScaling.R'
'Nanostring-methods.R'
'NanostringRCCReader.R'
'RNASeqAssay-methods.R'
'Readers.R'
'SCASet-methods.R'
'SingleCellAssay-methods.R'
'UtilityFunctions.R'
'ZlmFit-bootstrap.R'
'ZlmFit-logFC.R'
'ZlmFit.R'
'ebayes-helpers.R'
'filterEval.R'
'helper-methods.R'
'lmWrapper-bayesglm.R'
'lmWrapper-bayesglmWeight.R'
'lmWrapper-cglm.R'
'lmWrapper-glm.R'
'lmWrapper-glmer.R'
'lmWrapper-ridge.R'
'lrtest.r'
'piest.R'
'thresholdSCRNA.R'
'zeroinf.R'
'zlmHooks.R'