gatingset_to_flowjo() fails with unsupported transformation: LIN

[kforner]

We have a customer GatingSet, in the legacy V1 format (rds), which once converted to the newest format, fails with:

convert_legacy_gs('gs_v1', 'gs_converted')

# then elsewhere
 ./gs-to-wsp ./gs_converted/ /tmp/flowjo.wsp
terminate called after throwing an instance of 'std::runtime_error'
  what():  unsupported transformation: LIN

The convert_legacy_gs() is run with:

• R 4.1.3
• flowWorkspace 4.6.0
• cytolib 2.6.2

The gs-to-wsp binary is from the docker image public.ecr.aws/x4k5d9i7/cytoverse/gs-to-wsp:latest

N.B: it works on some others gating set files.

It's currently difficult to provide the file, for confidentiality reasons. If necessary, we'll try to anonymize it.