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Freesurfer 7.1 ? #30
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Hi Jamie, Thanks for posting, sounds great! We are currently working on it, planning to test how well it works with the new FS version. Will post our findings in the repo and in this issue as well. Best, |
Hi, Would love to use your software, however, does the reply to Jamie entail that the .txt-files from newer fs is not compatible with the current Qoala-T? I am receiving an error message when uploading - might the fs version (7.1) be underlying the issue? |
Hello, Thanks in advance |
Hello, we are a group of students working on analyzing MRI data with Freesurfer and we were planning to use Qoala-T to do QC of our data but during the process we encountered some problems: First of all, can we use subset-based approach for outputs of Freesurfer version 7.3.2 or generally any other version of Freesurfer which is higher than 7.1? If not are you supposed to validate the architecture for every single new version of Freesurfer, perhaps the variation between close versions such as 7.1 and 7.3 not that much. Secondly, there are many manually rated recon-all outputs from Freesurfer that is version 7 or higher, can we use these data from other studies to create a bigger training data for the subset-based approach? Or do we have to use the data that come from the same study to create a training set. We could not make sense of the latter but since there is not any trained model for versions that are higher than version 7 we could not be sure either. We really appreciate the work and thank you for your effort. Sincerely, |
Hello Qoala-T repo,
My research group was interested in deploying Qoala-T in a decent size sample of subjects (~2K) that had completed Freesurfer 7.1. I wondered how well Qoala-T performs with that new FS version? Anything to watch out for, etc.? I thought I would get some thoughts before we dug too deeply into things. Any thoughts are deeply appreciated!
Thanks much,
Jamie.
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