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other systems where this is reproducible [e.g. "my laptop", "none"]
Additional context
Add any other context about the problem here.
This is the cmake command and output:
$ cmake -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx -DBUILD_AFQMC=1 -DBUILD_PPCONVERT=1 -DQMC_MIXED_PRECISION=1 -DCMAKE_BUILD_TYPE=Debug -DMPIEXEC_PREFLAGS="--allow-run-as-root;--bind-to;none" ..�[0;m
-- The C compiler identification is GNU 13.2.0
-- The CXX compiler identification is GNU 13.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- ENABLE_CUDA disabled
-- GPU device architectures:
-- Defining the float point precision
Base precision = float
Full precision = double
-- CMAKE_BUILD_TYPE is DEBUG
-- LMY engine is not compatible with CPU mixed precision build! Disabling LMY engine
-- Enable sanitizer ENABLE_SANITIZER=none
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Trying to figure out compiler options ....
-- C++ Compiler is identified by QMCPACK as : GNU
-- Looking for C++ include cstdio
-- Looking for C++ include cstdio - found
-- libstdc++/C++ compiler version compatibility check pass
-- C++17 standard library supported
-- QMC_SIMD_ALIGNMENT is set to 64
-- OpenMP taskloop functionality check pass
-- ENABLE_OMP_TASKLOOP is set to ON
-- Found MPI_CXX: /usr/bin/mpicxx (found version "3.1")
-- Found MPI: TRUE (found version "3.1") found components: CXX
-- MPI runner MPIEXEC_EXECUTABLE : /usr/bin/mpiexec
-- MPIEXEC_NUMPROC_FLAG :-n
-- MPIEXEC_PREFLAGS : --allow-run-as-root;--bind-to;none
-- Tests run as : /usr/bin/mpiexec -n NUM_PROCS --allow-run-as-root --bind-to none EXECUTABLE
-- MPI is enabled
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Trying to find LAPACK from Intel MKL
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Could NOT find BLAS (missing: BLAS_LIBRARIES)
-- Could NOT find LAPACK (missing: LAPACK_LIBRARIES)
Reason given by package: LAPACK could not be found because dependency BLAS could not be found.
-- Intel MKL library files not found via FindLAPACK.
-- Trying to find alternative LAPACK libraries
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for cheev_
-- Looking for cheev_ - not found
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so
-- LAPACK linker flags:
-- LAPACK libraries: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so
CMake Warning at CMakeLists.txt:558 (message):
AFQMC - MKL not found, using simple sparse matrix routines. Link with MKL
sparse libraries for better performance.
-- Selected vendor math library GENERIC
-- SINCOS_INCLUDE : cmath
-- Performing Test HAVE_SINCOS
-- Performing Test HAVE_SINCOS - Success
-- Found FFTW: /usr/lib/x86_64-linux-gnu/libfftw3.so
-- FFTW_INCLUDE_DIR=/usr/include
-- FFTW_LIBRARIES=/usr/lib/x86_64-linux-gnu/libfftw3.so
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3")
-- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.14")
-- Linking dynamic HDF5 library
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C
-- Serial HDF5 library found
-- Using HDF5 non-scalable serial I/O code paths
CMake Warning at CMakeLists.txt:685 (message):
MPI builds may have performance loss by not using parallel HDF5! (Safe to
ignore for workstation builds).
-- Found Boost: /usr/include (found suitable version "1.83.0", minimum required is "1.61.0")
-- Setting Boost_INCLUDE_DIRS=/usr/include
-- CUDA NVTX APIs disabled
-- VTune ittnotify APIs disabled
Project C_FLAGS: -fopenmp -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -Wno-deprecated -Werror=vla -ffast-math -march=native -g-fno-omit-frame-pointer
Project CXX_FLAGS: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -Wno-deprecated -Wvla -Wcomment -Wmisleading-indentation -Wmaybe-uninitialized -Wuninitialized -Wreorder -Wno-unknown-pragmas -Wno-sign-compare -Wsuggest-override -ffast-math -march=native -g-fno-omit-frame-pointer
Project INCLUDE_DIRECTORIES: /builds/correaa/boost-mpi3/qmcpack/build/src;/builds/correaa/boost-mpi3/qmcpack/src
Project EXE_LINKER_FLAGS:
Project SHARED_LINKER_FLAGS:
-- Found Git: /usr/bin/git (found version "2.43.0")
-- QMC_SYMLINK_TEST_FILES = ON. Using symbolic links for large test files may cause test failures if the build is installed on a separate filesystem from the source.
-- Found Python3: /usr/bin/python3 (found version "3.11.7") found components: Interpreter
-- Unable to import PySCF python module. PySCF tests will not be run.
-- Unable to import GPAW python module. GPAW converter tests will not be run.
-- Did not find a patched Quantum ESPRESSO (QE) distribution with pw2qmcpack.x. QE tests will not be run.
-- Did not find RMG (rmg-cpu). RMG tests will not be run.
-- Ready to parse QMCPACK source tree
sed supports -E
Git branch: develop
Git commit hash: 65dd666f3dbd9d7808cba5458ade5a4ccd5f294c
Building AFQMC performance executable
-- Performing Test ISNAN_WORKS
-- Performing Test ISNAN_WORKS - Success
-- ppconvert enabled.
-- Adding integration tests for QMCPACK
Use --log-level=VERBOSE CMake option for details of which tests will be enabled.
Skipping converter tests with HDF output because executable h5diff was not found
Adding estimator tests for QMCPACK
Missing python module pandas, not adding test estimator-latdev
Missing python module pandas, not adding test estimator-sofk
Adding I/O tests for QMCPACK
QMC_DATA is not set. Performance tests will be skipped.
Adding system tests for QMCPACK
Missing python module pyscf, not adding test afqmc_workflow
Adding example tests for QMCPACK
Adding Nexus tests
-- Configuring done (20.3s)
-- Generating done (0.3s)
CMake Warning:
Manually-specified variables were not used by the project:
BUILD_PPCONVERT
-- Build files have been written to: /builds/correaa/boost-mpi3/qmcpack/build
$ make --jobs=2 || make VERBOSE=1
The text was updated successfully, but these errors were encountered:
Describe the bug
Deterministic test fail in this CI machine with version 0b1184fe of QMCPACK
https://gitlab.com/correaa/boost-mpi3/-/jobs/6147742115
This is a typical failure:
To Reproduce
The full instructions are contained here https://gitlab.com/correaa/boost-mpi3/-/jobs/6147742115
Expected behavior
ctests should succeed
System:
module list
]Additional context
Add any other context about the problem here.
This is the cmake command and output:
The text was updated successfully, but these errors were encountered: