{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":593324987,"defaultBranch":"main","name":"napari-spot-detection","ownerLogin":"QI2lab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-01-25T18:44:45.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/55715320?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1674672425.7243898","currentOid":""},"activityList":{"items":[{"before":"e0c15bda926514aee9bca8f36f1879198411ac9a","after":"cbeb5ebfad16c125ea047bfecf6819d213417cc9","ref":"refs/heads/main","pushedAt":"2024-02-28T00:11:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"Fix: Numerous fixes dealing with skewed data handling. Added ability to flip raw data scan direction to match our expectations when loading model.","shortMessageHtmlLink":"Fix: Numerous fixes dealing with skewed data handling. Added ability …"}},{"before":"41cfaeaa8f48fdb19b36509e96dd9714c7e84612","after":"e0c15bda926514aee9bca8f36f1879198411ac9a","ref":"refs/heads/main","pushedAt":"2024-02-10T05:03:01.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"dpshepherd","name":"Doug Shepherd","path":"/dpshepherd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26783318?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/QI2lab/napari-spot-detection","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/QI2lab/napari-spot-detection"}},{"before":"58465070f1bab7bc6279b802ec45184a1b116906","after":"41cfaeaa8f48fdb19b36509e96dd9714c7e84612","ref":"refs/heads/main","pushedAt":"2024-01-13T03:30:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"FIx: scan orientation of OPM data, batch localization error when no spots","shortMessageHtmlLink":"FIx: scan orientation of OPM data, batch localization error when no s…"}},{"before":"ba37cc0090c5b3654c99aa08760be8503b84857b","after":"58465070f1bab7bc6279b802ec45184a1b116906","ref":"refs/heads/main","pushedAt":"2024-01-08T23:01:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"dpshepherd","name":"Doug Shepherd","path":"/dpshepherd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26783318?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/main'","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/main'"}},{"before":"2cf90300f6d03b08cf24a3268ba490a009a20735","after":"ba37cc0090c5b3654c99aa08760be8503b84857b","ref":"refs/heads/main","pushedAt":"2024-01-05T16:02:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpshepherd","name":"Doug Shepherd","path":"/dpshepherd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26783318?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"076fedc5abcd1f55947e8cef517872e891163063","after":"2cf90300f6d03b08cf24a3268ba490a009a20735","ref":"refs/heads/main","pushedAt":"2024-01-03T22:52:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpshepherd","name":"Doug Shepherd","path":"/dpshepherd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26783318?s=80&v=4"},"commit":{"message":"Fix: bump threshold up to avoid hang","shortMessageHtmlLink":"Fix: bump threshold up to avoid hang"}},{"before":"4460f89f0bf578bd3bf2a982920f0c2d7ff4c605","after":"076fedc5abcd1f55947e8cef517872e891163063","ref":"refs/heads/main","pushedAt":"2024-01-03T22:39:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpshepherd","name":"Doug Shepherd","path":"/dpshepherd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26783318?s=80&v=4"},"commit":{"message":"Fix: incorrect logic for appending file extensions to results","shortMessageHtmlLink":"Fix: incorrect logic for appending file extensions to results"}},{"before":"dd637294e8577c6874d02e26712c1502838a6b7c","after":"4460f89f0bf578bd3bf2a982920f0c2d7ff4c605","ref":"refs/heads/main","pushedAt":"2024-01-01T00:58:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpshepherd","name":"Doug Shepherd","path":"/dpshepherd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26783318?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"625e0d2324c1bf8445e956654616a94d88685737","after":"dd637294e8577c6874d02e26712c1502838a6b7c","ref":"refs/heads/main","pushedAt":"2024-01-01T00:56:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dpshepherd","name":"Doug Shepherd","path":"/dpshepherd","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26783318?s=80&v=4"},"commit":{"message":"Update _widget.py to spots3d classpath","shortMessageHtmlLink":"Update _widget.py to spots3d classpath"}},{"before":"02033d707234808c44af2da512fe87d127c8f60a","after":"625e0d2324c1bf8445e956654616a94d88685737","ref":"refs/heads/main","pushedAt":"2023-12-21T03:04:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"Fix: allow for ND images, improve spots/threshold plot, fixing saving, initial draft of batch localization with directory of TIFFs or a Zarr","shortMessageHtmlLink":"Fix: allow for ND images, improve spots/threshold plot, fixing saving…"}},{"before":"8242d618c379a3655eced44f918bdd99b74d8342","after":"02033d707234808c44af2da512fe87d127c8f60a","ref":"refs/heads/main","pushedAt":"2023-11-14T13:18:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add code to run pipeline in directory\n\nHere we run in a directory that contains a localization parameters file,\nand a directory of tiff files. Parameters are the samefor all images.\nWe use for now the plugin interface and methods to execute the pipeline\ninstead of writing dedicated loading and executing functions.","shortMessageHtmlLink":"add code to run pipeline in directory"}},{"before":"ceaa55dfc8d78a652a69d4f57ba8a3ab7ae10ea4","after":"8242d618c379a3655eced44f918bdd99b74d8342","ref":"refs/heads/main","pushedAt":"2023-11-14T11:34:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add tabs to execute pipeline on directory","shortMessageHtmlLink":"add tabs to execute pipeline on directory"}},{"before":"cd35104dc45d6f9b85758a3bf00f9c2f5fe0d546","after":"ceaa55dfc8d78a652a69d4f57ba8a3ab7ae10ea4","ref":"refs/heads/main","pushedAt":"2023-11-14T03:59:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"Various fixes, including working spots vs threshold plot","shortMessageHtmlLink":"Various fixes, including working spots vs threshold plot"}},{"before":"692c0df113351ad1dc34687c6a1ac6a7d1ae06ee","after":"cd35104dc45d6f9b85758a3bf00f9c2f5fe0d546","ref":"refs/heads/main","pushedAt":"2023-11-10T15:37:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add candidates vs threshold plot\n\nfix #6","shortMessageHtmlLink":"add candidates vs threshold plot"}},{"before":"8572f932d8cefd9cd68607c01f938bbdc4f2ca35","after":"692c0df113351ad1dc34687c6a1ac6a7d1ae06ee","ref":"refs/heads/main","pushedAt":"2023-11-10T14:52:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add button to localize whole directory","shortMessageHtmlLink":"add button to localize whole directory"}},{"before":"8ee0dedae9b36574a08208a1d88938a0375fc92f","after":"8572f932d8cefd9cd68607c01f938bbdc4f2ca35","ref":"refs/heads/main","pushedAt":"2023-11-09T13:20:46.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add removal of fitted spots out of the sample volume\n\nfix #3","shortMessageHtmlLink":"add removal of fitted spots out of the sample volume"}},{"before":"0a009eaead5263ceacbbf049d5c378e6133f1625","after":"8ee0dedae9b36574a08208a1d88938a0375fc92f","ref":"refs/heads/main","pushedAt":"2023-11-09T12:31:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add hot pixels correction\n\nfix #4","shortMessageHtmlLink":"add hot pixels correction"}},{"before":"edb4a8c8d56e88542bbedee964de3fb65b51f86b","after":"0a009eaead5263ceacbbf049d5c378e6133f1625","ref":"refs/heads/main","pushedAt":"2023-11-09T10:54:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"update layer's scale from physical parameters\n\nfix #1","shortMessageHtmlLink":"update layer's scale from physical parameters"}},{"before":"9686c497670f4a439cfbb3738f2e5deb432cdcf9","after":"edb4a8c8d56e88542bbedee964de3fb65b51f86b","ref":"refs/heads/main","pushedAt":"2023-11-08T21:39:22.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"(1) fixed issue where GUI would open file dialog for PSF when it was already set using (2) fixed unhandled exception if called without any image data.","shortMessageHtmlLink":"(1) fixed issue where GUI would open file dialog for PSF when it was …"}},{"before":"6e3e058f1285601a88ad81b49c6524492d2308a3","after":"9686c497670f4a439cfbb3738f2e5deb432cdcf9","ref":"refs/heads/main","pushedAt":"2023-10-20T13:43:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add verbosity control","shortMessageHtmlLink":"add verbosity control"}},{"before":"d640b5438fda28f5c27b149199400f6724db991c","after":"6e3e058f1285601a88ad81b49c6524492d2308a3","ref":"refs/heads/main","pushedAt":"2023-08-08T07:31:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"change dog_thresh from slider to text_box","shortMessageHtmlLink":"change dog_thresh from slider to text_box"}},{"before":"c78de7051f8af43d6ed069d81977b6ac1baa6640","after":"d640b5438fda28f5c27b149199400f6724db991c","ref":"refs/heads/main","pushedAt":"2023-07-27T09:04:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add again `min_spot_z/xy_factor` for candidates","shortMessageHtmlLink":"add again min_spot_z/xy_factor for candidates"}},{"before":"4c829e35412e6b93853052918a8f5b70b190d65f","after":"c78de7051f8af43d6ed069d81977b6ac1baa6640","ref":"refs/heads/main","pushedAt":"2023-06-15T00:39:25.579Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"fix save / export `find_candidates_source_data`","shortMessageHtmlLink":"fix save / export find_candidates_source_data"}},{"before":"812774a4b156129733b475cd3c25b5ce9d2ce62f","after":"4c829e35412e6b93853052918a8f5b70b190d65f","ref":"refs/heads/main","pushedAt":"2023-06-14T21:50:34.825Z","pushType":"push","commitsCount":1,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"update defaults","shortMessageHtmlLink":"update defaults"}},{"before":"ac564a0b70b4a06f0d4ab5315a45586568cc1625","after":"812774a4b156129733b475cd3c25b5ce9d2ce62f","ref":"refs/heads/main","pushedAt":"2023-06-14T21:41:28.870Z","pushType":"push","commitsCount":1,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"fix initialization of `n_spots_to_fit`","shortMessageHtmlLink":"fix initialization of n_spots_to_fit"}},{"before":"68589766a4d098321fafcda920f8c0d7107016af","after":"ac564a0b70b4a06f0d4ab5315a45586568cc1625","ref":"refs/heads/main","pushedAt":"2023-06-12T22:46:16.825Z","pushType":"push","commitsCount":2,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"add selection of source data for peak finding","shortMessageHtmlLink":"add selection of source data for peak finding"}},{"before":"9b59c69b58b3495b768b8dec70dbd4ca36a7cd2b","after":"68589766a4d098321fafcda920f8c0d7107016af","ref":"refs/heads/main","pushedAt":"2023-06-09T22:12:34.992Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"add debugging messages","shortMessageHtmlLink":"add debugging messages"}},{"before":"10bf677c5dc02dfbd044d07eddabdfcbd89bcd3b","after":"9b59c69b58b3495b768b8dec70dbd4ca36a7cd2b","ref":"refs/heads/main","pushedAt":"2023-06-09T21:12:57.994Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"fix DoG parameters from GUI\n\nThe parameters were not fetched from the GUI.\nAlso replaced DoG kernel size from sliders to tetx boxes.\nAnd added 2 flags in __init__() to display deskwed deconv and DoG images.","shortMessageHtmlLink":"fix DoG parameters from GUI"}},{"before":"13476954fc8b5491dce185fe55a1a210235b2d2a","after":"10bf677c5dc02dfbd044d07eddabdfcbd89bcd3b","ref":"refs/heads/main","pushedAt":"2023-06-08T20:23:07.801Z","pushType":"push","commitsCount":1,"pusher":{"login":"AlexCoul","name":null,"path":"/AlexCoul","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23435837?s=80&v=4"},"commit":{"message":"use `np.nanpercentile` instead of `np.percentile`","shortMessageHtmlLink":"use np.nanpercentile instead of np.percentile"}},{"before":"61282ef3b94cc2783ea7dd1e08f2d9f9183fc325","after":"13476954fc8b5491dce185fe55a1a210235b2d2a","ref":"refs/heads/main","pushedAt":"2023-06-01T15:27:00.704Z","pushType":"push","commitsCount":4,"pusher":{"login":"ptbrown1729","name":"Peter Brown","path":"/ptbrown1729","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32523186?s=80&v=4"},"commit":{"message":"update localization export","shortMessageHtmlLink":"update localization export"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEBxUVAAA","startCursor":null,"endCursor":null}},"title":"Activity · QI2lab/napari-spot-detection"}