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I use FreeSurfer input and use the recon workflow with mrtrix single shell ACT.
While 0.19.1 works like a charm, I am now encountering this as soon as the pipeline loads:
File "/usr/local/miniconda/lib/python3.10/multiprocessing/process.py", line 314, in _bootstrap
self.run()
File "/usr/local/miniconda/lib/python3.10/multiprocessing/process.py", line 108, in run
self._target(*self._args, **self._kwargs)
File "/usr/local/miniconda/lib/python3.10/site-packages/qsiprep/cli/run.py", line 1198, in build_recon_workflow
retval['workflow'] = init_qsirecon_wf(
File "/usr/local/miniconda/lib/python3.10/site-packages/qsiprep/workflows/recon/base.py", line 99, in init_qsirecon_wf
single_subject_wf = init_single_subject_wf(
File "/usr/local/miniconda/lib/python3.10/site-packages/qsiprep/workflows/recon/base.py", line 208, in init_single_subject_wf
anat_ingress_node, available_anatomical_data = init_highres_recon_anatomical_wf(
File "/usr/local/miniconda/lib/python3.10/site-packages/qsiprep/workflows/recon/anatomical.py", line 162, in init_highres_recon_anatomical_wf
if has_qsiprep_t1w:
NameError: name 'has_qsiprep_t1w' is not defined
I suppose Python 3.10 changed something in global variables declaration.
The text was updated successfully, but these errors were encountered:
Same issue here when testing the reconstruction workflow: mrtrix_multishell_msmt_ACT-hsvs with qsiprep singularity image version 0.20.0.
No issue for the same data with the singularity image of version 0.19.0
Hello, I am testing the new 0.20.0 update.
I use FreeSurfer input and use the recon workflow with mrtrix single shell ACT.
While 0.19.1 works like a charm, I am now encountering this as soon as the pipeline loads:
I suppose Python 3.10 changed something in global variables declaration.
The text was updated successfully, but these errors were encountered: