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falcon -t parameters #574

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nottwy opened this issue Aug 26, 2017 · 0 comments
Open

falcon -t parameters #574

nottwy opened this issue Aug 26, 2017 · 0 comments

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@nottwy
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nottwy commented Aug 26, 2017

I try to change this parameter, but I find that it doesn't seem to work. I get this conclusion from the output in the stdout file.

Please notice the

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below.

My question is : does my parameter work or not?


Building index for preads.37

Kshift=28
BSHIFT=8
TooFrequent=50
(Kshift-1)/BSHIFT + (TooFrequent < INT32_MAX)=4
sizeof(KmerPos)=16
nreads=45118
Kmer=14
block->reads[nreads].boff=400045653
kmers=399414001
sizeof(KmerPos)*(kmers+1)=6390624032
Allocated 399414002 of 16 (6390624032 bytes) at 0x2b37b1e7e010
Kmer count = 399,414,001
Using 11.90Gb of space
Revised kmer count = 342,813,299
Index occupies 5.11Gb

Comparing preads.79 to preads.37

Capping mutual k-mer matches over 10000 (effectively -t100)

Hit count = 2,132,012,232
Highwater of 68.64Gb space

 2,132,012,232 14-mers (1.332498e-08 of matrix)
    14,342,521 seed hits (8.964010e-11 of matrix)
        36,086 confirmed hits (2.255359e-13 of matrix)

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