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question on header in p_ctg.fa #138

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dgordon562 opened this issue Jul 15, 2015 · 3 comments
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question on header in p_ctg.fa #138

dgordon562 opened this issue Jul 15, 2015 · 3 comments
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@dgordon562
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If a sequence has a header like this:

000000F 000084222:B000072603:B000049555:E~000049555:E ctg_linear 221334 933548

what is the "933548"?
@pb-jchin
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you can ignore that for most of time. 221334 is the estimated contig length. 933548 is the number of overlapped bases in the contig path.

@pb-cdunn
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Noted in FAQ.

@ebioman
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ebioman commented Oct 13, 2015

Hi
The link in the FAQ is broken. (Not anymore.)
If you say it is the estimated length, what is that supposed to mean. Is it the actual length of this contig or not ?

pacbbbbot pushed a commit that referenced this issue Apr 25, 2018
Merge pull request #138 in SAT/falcon from feature/TAG-2250-dazzler-s…
64208e5 
…ub-commands-with-datander to develop

* commit 'ec1d06def82c9b8410e03cf0689363f2bb520c30':
  Add dazzler sub-commands for split/apply/combine strategy
  Fix any relative input paths in generic_scatter_one and generic_run
  Add rm_force()
  Relax NPROC for build_rdb/pdb
@NicMAlexandre NicMAlexandre mentioned this issue Mar 25, 2019
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@pb-jchin @ebioman @dgordon562 @pb-cdunn