Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Assess the correlation between mRNA and protein separated out by immune subtype #61

Open
sgosline opened this issue Feb 2, 2021 · 3 comments
Open

Assess the correlation between mRNA and protein separated out by immune subtype #61

sgosline opened this issue Feb 2, 2021 · 3 comments
Assignees
@LifeWorks

Comments

@sgosline
Copy link
Member

sgosline commented Feb 2, 2021

Currently @pietrisko is analyzing the agreement between mRNA and protein separated out by immune subtype. What subtypes show high correlation in each subtype? W hich subtypes disagree?
@sgosline
Copy link
Member Author

sgosline commented Feb 9, 2021

Are the immune subtypes going to be analyzed in time for publication?

@pietrisko
Copy link
Collaborator

@sgosline added files to perfeval/figures

@sgosline
Copy link
Member Author

sgosline commented Oct 15, 2021 •
edited

I still like this idea - we can group patients by subtype then compute the mrna/prot correlation. Assigning to @LifeWorks so that he can break down the current immune subtype calculation file to add in this step.

@sgosline sgosline assigned LifeWorks and unassigned pietrisko Oct 15, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@LifeWorks LifeWorks

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@LifeWorks @sgosline @pietrisko