SSplots: Untested/Unused parameters

[efletcherPIFSC]

The following SSplot Functions arguments itself or its one of its options are either not tested, unused, unimplemented, or has an issue stated in its original code documentation (as of 1/10/2023):

• SSplotEnsemble
  • pdf/use_pdf option for pdf plots (not tested for TRUE)
  • mcmcVec mcmc vector TODO TODO. Default is FALSE
  • indexQlabel TRUE/FALSE include labels for indices. Default is TRUE (currently not used)
  • plot Deprecated. Plots (and subplots) are drawn to the active plot device by default (TRUE), and the option to disable this, via FALSE, is unused.
  • new Deprecated. New plot windows are created by default (TRUE), and the option to disable this, via FALSE, is unused.
• SSplotModelComp
  • pdf/use_pdf Not tested for TRUE
  • indexfleets CHECK IF NEEDED or how to adjust indexfleets
  • mcmcVec NOT TESTED Vector of TRUE/FALSE values (or single value) indicating
  • plot Deprecated. Plots (and subplots) are drawn to the active plot device by default (TRUE), the option to disable this via FALSE, is unused here.
  • new Deprecated. New plot windows are created by default (TRUE), and the option to disable this, via FALSE, is unused.
• SSplotHCXval
  • subplots optional use of c("cpue","len","age"), yet to be tested for age.
  • mcmcVec NOT TESTED Vector of TRUE/FALSE values (or single value) indicating
  • shadealpha Transparancy adjustment used to make default shadecol. (currently not used)
  • indexfleets CHECK IF NEEDED or how to adjust indexfleets
  • plot Deprecated. Plots (and subplots) are drawn to the active plot device by default (TRUE), and the option to disable this, via FALSE, is unused.
• SSplotJABBAres
  • pdf/use_pdf option for pdf plots (not tested for TRUE)
  • plot Deprecated. Plots (and subplots) are drawn to the active plot device by default (TRUE), and the option to disable this, via FALSE, is unused.
  • xlim Optional, values for x-axis range of years to display on plot.' Default = "default" displays all years of available data. (currently not used) xlim and ylim parameter documentation #67
  • new Deprecated. New plot windows are created by default (TRUE), and the option to disable this, via FALSE, is unused.
• SSplotRetro
  • mcmcVec NOT TESTED Vector of TRUE/FALSE values (or single value) indicating mcmc values are used
  • plot Option to draw subplots and plot in the interface. Deprecated. Option to disable will be removed in future version.
  • new Deprecated. New plot windows are created by default (TRUE), and the option to disable this, via FALSE, is unused.
  • pdf/use_pdf option for pdf plots (currently does not work when subplots specified)
  • indexQlabel TRUE/FALSE, if TRUE add catchability to legend in plot of index fits (currently not used)
  • shadealpha set the transparency level (alpha) of the area of uncertainty. Defalut to 0.3 (currently not used)
• SSplotRunsTest
  • plot Deprecated. Plots (and subplots) are drawn to the active plot device by default (TRUE), the option to disable this via FALSE, is unused here.