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Add other simulation models #98

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lazappi opened this issue May 25, 2020 · 0 comments
Open

Add other simulation models #98

lazappi opened this issue May 25, 2020 · 0 comments
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backburner Unlikely to happen unless there is a specific need enhancement

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@lazappi
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lazappi commented May 25, 2020

This is a running list of other simulation models that could be added to Splatter. Adding new models is currently not a priority but it will be considered if there is a need from the community. Any pull requests implementing these models would also be warmly welcomed!

If you would like to discuss a particular model please comment on the specific issue for that model (or create one if it doesn't exist).

Issue Model Code DOIs
#2 CIDR https://github.com/VCCRI/CIDR 10.1101/068775, 10.1186/s13059-017-1188-0
#8 Qui
#12 PowSimR https://github.com/bvieth/powsimR 10.1093/bioinformatics/btx435, 10.1101/117150
#18 zingeR https://github.com/statOmics/zingeR 10.1101/157982
#33 dropsim https://github.com/marchinilab/dropsim
#34 zinbwaveZinger https://github.com/statOmics/zinbwaveZinger
#43 ccfindR 10.26508/lsa.201900443
#44 LineagePulse https://github.com/YosefLab/LineagePulse
#50 CancerInSilico https://github.com/FertigLab/CancerInSilico 10.1101/328807
#54 SymSim https://github.com/YosefLab/SymSim 10.1038/s41467-019-10500-w, 10.1101/378646
#55 bayNorm https://github.com/WT215/bayNorm 10.1101/384586
#59 M3Drop https://github.com/tallulandrews/M3Drop 10.1093/bioinformatics/bty1044, 10.1101/065094
#63 NetNMF-sc https://github.com/raphael-group/netNMF-sc 10.1101/544346
#70 scDesign https://github.com/Vivianstats/scDesign 10.1101/437095
@lazappi lazappi added enhancement backburner Unlikely to happen unless there is a specific need labels May 25, 2020
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