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RawFileConverter missing binary for KNIME plugin #7364

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poshul opened this issue Feb 12, 2024 · 7 comments
Open

RawFileConverter missing binary for KNIME plugin #7364

poshul opened this issue Feb 12, 2024 · 7 comments
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@poshul
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poshul commented Feb 12, 2024

With OpenMS 3.0 and Knime 5.2 the RawFileConverter node doesn't run, and throws a "Failed to find matching binary." code. Interestingly enough FileConverter is perfectly happy to do the raw conversion so long as it knows where ThermoRawFileParser.exe is.

@jpfeuffer
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jpfeuffer commented Feb 12, 2024

Raw file converter needs the Openms thirdparty plugin.

@poshul
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poshul commented Feb 12, 2024

Yup. I've got that installed.

@jpfeuffer
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I don't remember the details of how this was implemented.

@poshul
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poshul commented Feb 12, 2024

I checked the Binaries.ini for the thirdparty package, per https://github.com/genericworkflownodes/GenericKnimeNodes/wiki/How-to-handle-missing-binaries . It looks like the link to the ThermoRawFileParser folder is still there, and the folder has the executable in it.

It's not the end of the world, as I can still get the functionality by pushing the ThermoRawFileParser.exe from a file importer node to the FileConverter.

@jpfeuffer
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Failed to find matching binary means that the adapter exe is not found in the plugin.

Code is here:

# Note: We expose FileConverter twice.

@jpfeuffer
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Binaries.ini are for the third party exes.
Where do you get the thermorawparser.exe from. The idea is that they are included in the knimw third party plugin. No external exe needed.

@jpfeuffer
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There probably needs to be an extra copy for FileConverter into the TPplugin here:

if(${TOOL} IN_LIST THIRDPARTY_ADAPTERS)

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