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Comet scores duplicated #7310

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jpfeuffer opened this issue Jan 22, 2024 · 1 comment
Open

Comet scores duplicated #7310

jpfeuffer opened this issue Jan 22, 2024 · 1 comment

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@jpfeuffer
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                                        <UserParam type="string" name="MS:1002258" value="3"/>
                                        <UserParam type="string" name="MS:1002259" value="8"/>
                                        <UserParam type="string" name="num_matched_peptides" value="87"/>
                                        <UserParam type="int" name="isotope_error" value="1"/>
                                        <UserParam type="float" name="MS:1002252" value="0.287"/>
                                        <UserParam type="float" name="COMET:xcorr" value="0.287"/>
                                        <UserParam type="float" name="MS:1002253" value="0.07"/>
                                        <UserParam type="float" name="COMET:deltaCn" value="0.07"/>
                                        <UserParam type="float" name="MS:1002255" value="11.9"/>
                                        <UserParam type="float" name="COMET:spscore" value="11.9"/>
                                        <UserParam type="float" name="MS:1002256" value="7.0"/>
                                        <UserParam type="float" name="COMET:sprank" value="7.0"/>
                                        <UserParam type="float" name="MS:1002257" value="999.0"/>
                                        <UserParam type="float" name="Comet:lnrSp" value="1.9459"/>
                                        <UserParam type="float" name="COMET:lnRankSP" value="1.9459"/>
                                        <UserParam type="float" name="COMET:deltaLCn" value="0.0"/>
                                        <UserParam type="float" name="COMET:lnExpect" value="6.9068"/>
                                        <UserParam type="float" name="Comet:IonFrac" value="0.375"/>
                                        <UserParam type="float" name="COMET:IonFrac" value="0.375"/>
                                        <UserParam type="float" name="COMET:lnNumSP" value="4.4659"/>

everything twice or three times.. I think this is straight out of CometAdapter.

@timosachsenberg
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peptide_hit_.setMetaValue("Comet:IonFrac", value); // name: Comet:IonFrac
peptide_hit_.setMetaValue("COMET:IonFrac", value); // matched_ions / total_ions

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